Aeromicrobium sp. A1-2: C6I20_14925
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Entry
C6I20_14925 CDS
T05642
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aeb
Aeromicrobium sp. A1-2
Pathway
aeb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aeb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C6I20_14925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aeb03400
]
C6I20_14925
Enzymes [BR:
aeb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C6I20_14925
DNA repair and recombination proteins [BR:
aeb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C6I20_14925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXT86340
UniProt:
A0A3B7D7A6
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All DBs
Position
3034308..3036683
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AA seq
791 aa
AA seq
DB search
MPRTSQTQTVSVAGHRLRLTHPDKVIYPETGTTKAEVMAYYMEIAPHLLPHLADRIVTRK
RWVDGVGSAADPGEVFFEKNLPSSAPDWIRRVEIEHRNHTTTYPVFDSAAALAWAGQVAA
LELHVPQWRVASHGVPQNPDRLVLDLDPGPGAGLPECVEVAKRARALLRELDLEAYPVTS
GSKGLHLYAGLDGQHDAEYVNRFAKQLALALESELPDLVVSSMKKSLRNGKVLVDWSQNN
GNKTTIAPYSLRGTSVPHVAAPRTWREMTADLQHLTMDEVLTRMKHRTDPLAALGGAAPS
EDRLATYRSKRDSAKTPEPVPELVPGGSHTTSFVIQEHHASSLHWDFRLERDGVLVSWAL
PKGVPTDPSKNHLAIQTEDHPLEYATFEGHIPRGEYGGGDVTIWDAGTFELEKWRDGKEV
IATLTGRAGGGLDQPRKYALIKTGKNWLIHLMEPKTRTDGPKAARMPARRLGDGFIAPML
ATLGSTKDIDESSDAWAFEMKWDGIRAVAVVDGSDVGLFTRNEKDVTAAYPEVVEALAAL
GLDDTVLDGEIVALDRAGAPDFGRLQRRMGLTRPAEIAAAQRHVSVEYMVFDLLRSEGRA
LAGESYDDRRTALLDLRIDGAVARVPLAFDGSLAKAVESSKALGLEGVLAKRRDSRYRSG
KRAQAWIKIKHRRMQEVVVGGWRTGLGARSGRIGALLLGIPDQGGLRYIGRVGTGFDERT
LTDLQRRLAGSPRKTSPFMDVPRDSARDAHWVTPRLVGEVSFAEWTASGQLRQPSWRGLR
TDKKPQEVALE
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaccagccagacccagaccgtctcggtcgcgggccatcgcctccgcctcacg
caccccgacaaggtcatctaccccgagaccgggacgaccaaggccgaggtcatggcctac
tacatggagatcgcgccgcatctgctgccgcacctcgcggaccgcatcgtgacccgcaag
cgctgggtcgacggcgtgggctctgccgccgaccccggtgaggtgttcttcgagaagaat
ctcccgtcgtcggcgccggactggatccgacgcgtcgagatcgagcaccgaaaccacacc
acgacgtaccccgtgttcgacagcgccgcggcgctggcgtgggccgggcaggtggccgcc
ctcgagctgcacgtgccgcagtggcgggtcgcctcgcacggagtcccacagaatccggac
cgtcttgtgctggacctcgaccccggccccggcgcggggcttcccgagtgcgtcgaggtc
gccaagcgggccagggccttgctgcgggagctcgacctcgaggcgtacccggtcacgagc
ggcagcaagggccttcacctgtacgcaggactcgacgggcagcacgacgccgagtacgtc
aaccggttcgccaagcagctcgcgctggcgttggagtccgagctgcccgacctggtcgtc
agctcgatgaagaagagcctgcgcaacggcaaggtcctggtcgactggagccagaacaac
ggcaacaagaccacgatcgcgccgtactcgctgcgcgggacatcggtgccgcacgtcgcg
gcgccccggacctggcgcgagatgaccgccgatctccagcacctcacgatggacgaggtg
ctgacccggatgaagcaccgcacggatccgctggccgcccttggcggcgcggccccctcc
gaggatcgcctcgcgacctaccggtccaagcgggattcggccaagacccccgagcccgtg
cccgagctggtgcccggcggcagccacacgacgtcgttcgtgatccaggagcatcacgcc
agcagcctgcactgggacttccggctcgagcgcgacggcgtgctggtctcgtgggccctg
cccaagggggtgccgaccgatccgagcaaaaatcatctggcgatccagaccgaggaccac
ccgctggagtacgcgacgttcgagggtcacatcccccggggcgagtacggaggcggtgac
gtcacgatctgggacgccggcacgttcgagctggagaaatggcgagacggcaaggaggtc
atcgcgacgctcacgggccgagcgggcggcgggctcgaccaaccccgcaagtacgccctg
atcaagaccggcaagaactggttgatccatctgatggagccgaagacccggaccgacggg
ccgaaggcagcacgaatgccggcccggcggctgggtgacggcttcatcgcgcccatgctc
gcgaccctcggctcgacgaaggacatcgacgaatcgtcggacgcctgggcgttcgagatg
aagtgggacggcatccgggcggtcgcggtcgtcgacggaagcgacgtcggcctgttcacc
cgcaacgagaaggacgtcaccgccgcctatccggaggtggtcgaggctctggctgccctc
ggactcgacgacacggtgctcgacggcgagatcgtggccctcgaccgcgcaggcgcgccc
gacttcggccggctgcagcgccgaatgggtctgacccgcccagccgagatcgcggcggcg
cagcgacacgtgtcggtcgagtacatggtgtttgacctgttgcggtccgagggtcgtgcg
ctcgcgggcgagtcgtacgacgatcgacgcacggcgttgctggacctgcgtatcgacggt
gccgtcgcccgcgtccccctcgccttcgacggatcgctggccaaggcggtcgagtcgagc
aaggcgctgggtctggagggggtgctggccaagcgtcgcgacagccgctaccgcagcggc
aagcgcgcccaggcctggatcaagatcaagcaccgtcgcatgcaggaggtcgtcgtcggc
ggctggcgcaccggcctcggtgccaggtccggccgcatcggcgctctactgctcggcatc
cccgatcagggtgggctccgctacatcgggcgggtcggcactggcttcgacgagcgcacc
ctcacggacctgcagcgacggctcgcgggctcgccacgcaagaccagcccgttcatggat
gttccgcgtgactctgctcgcgatgcacactgggtgacaccacgcctggtcggcgaggtg
tcgttcgcggagtggaccgccagtggtcagcttcgtcagccaagctggcgcggactacgt
accgacaagaagccgcaggaggtagccctggagtga
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