Alkalilimnicola ehrlichii: Mlg_1800
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Entry
Mlg_1800 CDS
T00391
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aeh
Alkalilimnicola ehrlichii
Pathway
aeh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mlg_1800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aeh03400
]
Mlg_1800
Enzymes [BR:
aeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mlg_1800
DNA repair and recombination proteins [BR:
aeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mlg_1800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
SBP_bac_3
RecG_dom3_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABI57144
UniProt:
Q0A7P3
LinkDB
All DBs
Position
2056294..2059794
Genome browser
AA seq
1166 aa
AA seq
DB search
MPEKHASPLTPPLPAKAGNREHWYGLHGATGALALAQAARAHDGLVVAVTDSPQQAARLD
TELRFFLGDHARGETPVFSFPDWETLPYDVFSPHQDIISERLAALYRLPRTRGGVLIVPV
NTLMQRLAPVSWLEGQGLMLGVGDRLDLDAMRERLEQAGYRCVSEVGEHGEFAVRGALLD
LFPMGATQPVRIDLFDDEVETLRHFDPDTQRTTEKIDRVELLPAREFPTDEAGITQFRGA
WRAAFEGDPSRSLVYREVSAGHLPAGIEYYLPLFFEETATLFDYLPKGALVARLGESDTQ
ADTYYTQVRNRYEQRRHDLERPLLAPERLFLSPDDLRERFNTLPQVVLHADTPAPEAPRP
REVVFETEPLPDLRNRPQADNPLERLTSYLSDYTGRVLFIAETTGHREALLERLQKHRIR
PQACDWEGFVTGDMPMGVAVAPVEHGAQVNQPAMALITEDAIYGDRAQQRRRRRAGAVRD
PETIIRDLTDLAIGAPVVHEDHGVGRYLGLQTLEAGGLTTEFLTLEYAKGDKLYVPVASL
HLISRYTGAEGDAVPVHQLGSDKWEKAKKRAAKRARDAAAELLDIYARRAAREGHAYEWR
DEDYQAFADAFPFEETPDQESAIAAVEADMRSSRPMDRVVCGDVGFGKTEVAMRAAFMGI
QDGRQVAVMVPTTLLAQQHFQNFRDRFSDWPVRVEVLSRFRSTKDTNAVLRDLADGKVDI
VIGTHKLLQDSVKYKDLGLVIIDEEHRFGVRQKEKLKKLRAEVDILTLTATPIPRTLNMS
LAGIRDLSIIATPPARRLAVKTFVNQWDPAIIQEACQRELKRGGQIYFLHNDLDSIDRIA
RELEELVPDARVDVAHGQMPERDLERVMLDFYHQRFNILVCSTIIESGIDVPTANTILIN
RADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPEKAMTADAKKRLEAISNLEDLGVGFALA
SHDLEIRGAGELLGEEQSGQISEVGFNLYTELLDRAVKALQSGEEPALDEPMHRGAEVDL
RIPALMPEDYLPDVHTRLVMYKRIANARTEAELDELQVEMIDRFGLLPDATRNLFRVTAL
KLRADALGIEKVEGLASGITLHFGSKPKIDPEALISLIQSSPETYRLQGQEKLQYRKHLP
EAEDRIRAVDELLRALRPSARETAGA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagaaacacgcctcaccgctgacaccgcccctccccgccaaggccggcaaccgc
gagcactggtacggcctgcacggggctaccggcgcgctggccctggcccaggcggcccgg
gcccatgacggcctggtggtggcggtcaccgacagcccccagcaggcggcgcggctggat
acggagttgcgcttcttcctcggcgatcacgcccggggcgagacgccggtgttcagcttc
ccggactgggagaccctgccctacgacgtcttctcaccccaccaggacatcatctccgag
cggctggccgcgctctaccgcctgccgcgcacccggggcggcgtgctgatcgtgccggtg
aacacgctgatgcagcgcctggccccggtgagctggctggagggccagggcctgatgctg
ggggtgggcgaccggctggacctggacgccatgcgcgagcggctggagcaggccggctac
cgctgcgtctccgaggtgggcgagcacggcgagttcgcggtgcgcggcgccctgctcgac
cttttccccatgggggccacacagccggtgcgcatcgacctgttcgacgacgaggtggag
accctgcgccacttcgacccggacacccagcgcaccaccgagaagatcgaccgggtggag
ctgctgccggcgcgggagttccccaccgacgaggcgggcatcacccagttccgcggggcg
tggcgcgccgccttcgagggtgacccctcgcgcagcctggtctaccgggaggtgagcgcc
ggccacctgccggcgggcatcgagtactacctgccgctctttttcgaggagacggccacc
ctgttcgactacctgcccaagggcgccctggtggcccgcctgggcgagtcggacacccag
gccgacacctactacacccaggtgcgcaaccgctacgagcagcgccgccacgacctggag
cggccgctgctggcaccggaacggctgttcctgagccccgacgacctgcgcgagcggttc
aacaccctgccccaggtggtgctgcacgccgacaccccggcgccggaggccccgcgcccc
cgcgaagtggttttcgaaaccgagccgctgcccgacctgcgcaaccgcccccaggcggac
aacccgctggagcgactcaccagttacctctccgactacaccggccgggtgctcttcatt
gccgaaaccaccggccaccgcgaggcgctgctggagcggctgcagaagcaccgcatccgc
ccccaggcgtgcgactgggaggggttcgtcaccggtgacatgcccatgggcgtggccgtg
gccccggtggagcacggcgcccaggtgaatcagcccgccatggcgctgatcaccgaggac
gccatctacggcgaccgggcccagcagcggcgccggcgccgcgccggggcggtgcgcgac
cccgagaccatcatccgcgacctgaccgacctggccatcggtgccccggtggtgcacgag
gaccacggcgtgggccgctacctggggctgcagaccctggaggccggcgggctgaccacc
gagttcctcaccctggagtacgccaagggcgacaagctctacgtgccggtggcctcgctg
catctgatctcccgctacaccggcgccgagggcgacgcggtgcccgtgcaccagttgggc
agcgacaagtgggagaaggccaagaagcgcgccgccaaacgcgcccgggacgccgccgcc
gagttgctggatatctacgcccgccgcgccgcccgcgagggccatgcctacgagtggcgg
gacgaggactaccaggccttcgccgatgccttccccttcgaggagaccccggaccaggag
agcgccatcgccgccgtggaggcggacatgcgctcgtcccgccccatggaccgggtggtc
tgcggcgacgtgggcttcggcaagaccgaggtggccatgcgcgccgccttcatgggcatc
caggacggccgccaggtggcggtgatggtgcccaccaccctgctggcccaacagcacttc
cagaacttccgcgatcgcttctcggactggccggtgcgcgtggaggtgctctcgcgcttt
cgcagcaccaaggacaccaacgcggtgctgcgcgacctggccgacggcaaggtggatatc
gtcatcggcacccacaagctgctgcaggactcggtcaagtacaaggacctggggctggtg
atcatcgacgaggagcaccgcttcggcgtccgccagaaggagaagctgaagaagctgcgc
gccgaggtggacatcctcaccctgaccgcgacgcccatcccgcgcacgctcaacatgtcc
ctggccggtatccgcgacctgtccatcatcgccaccccgccggcccgccgcctggcggtg
aaaaccttcgtcaaccagtgggacccggccatcatccaggaggcctgccagcgcgagctc
aagcgcggcgggcagatctacttcctgcacaacgacctggactccatcgaccgcattgcc
cgggagctggaagagctggtgccggacgcccgggtggacgtggcccacggccagatgccg
gagcgcgacctggagcgggtgatgctcgacttctaccaccagcgcttcaacatcctggtc
tgctccaccatcatcgagtccggcatcgacgtgcccactgccaacaccatcctgatcaac
cgcgccgacaagctgggccttgcccaactgcaccagctgcgcggccgggtgggccgctcc
caccaccgggcctacgcctacctgatcgcgccgccggagaaggccatgacggcggacgcc
aagaagcgcctggaggccatctccaacctggaggacctgggcgtgggcttcgccctggcc
agccacgacctggagatccgcggcgccggcgagctgctgggcgaggagcagagcgggcag
atcagcgaggtgggcttcaacctctacaccgagctgctggaccgggcggtcaaggcgctg
cagagcggcgaggagccggcgttggatgagcccatgcaccgtggcgccgaggtggatctg
cgcatcccggcgctgatgccggaggactacctgcccgacgtgcacacccggctagtgatg
tacaagcgcatcgccaacgcccgcacggaggcggagctggacgagctgcaggtggagatg
atcgaccgcttcggcctgctgccggacgccacccgcaacctgttccgcgttaccgccctc
aagctgcgcgccgacgccctgggcatcgagaaggtggaggggctggcctccggcattacc
ctgcactttggcagcaagccgaagatcgacccggaggcgctgatctcgctgatccagtcc
agcccggagacctaccggctgcagggtcaggagaagctgcagtaccgcaagcacctgccg
gaggcggaggaccggatccgcgccgtggacgagctgctgcgggcgctgcgaccttccgct
cgggagaccgccggcgcctga
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