Aeromicrobium erythreum: AERYTH_15445
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Entry
AERYTH_15445 CDS
T04236
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aer
Aeromicrobium erythreum
Pathway
aer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AERYTH_15445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aer03400
]
AERYTH_15445
Enzymes [BR:
aer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AERYTH_15445
DNA repair and recombination proteins [BR:
aer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AERYTH_15445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Ribosomal_L32p
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALX05991
UniProt:
A0A0U3TKF8
LinkDB
All DBs
Position
3227796..3230405
Genome browser
AA seq
869 aa
AA seq
DB search
MPSRGSSSSQTVTIDGRRLRLTNPDKVLYPATGTTKAEVISYYVAVADRLLPHASGRPVT
RKRWPDGVGAVGEAPGGGSGPRAEKAPGGGSGPRAEKAPGGGSGPRAEKSAELFFEKNLP
DSAPDWVRRVVVRHKSHVNVYPLVDGPAALAWLGQVAALELHVPQWRVEADGTPRHPDRL
VLDLDPGPGVGLAECVEVAHAARDLLADVGLEAFPVTSGSKGLHLYAHLTGEHDADYVNA
FAKQVAAALQDELPDLVVSSMKKSLREGRVLVDWSQNNQAKTTIAPYSLRGRAAADGEGP
FVAAPRSWDELGPDLRHLTMEEVLERDDDPLAGLDPQPTSGDEAPVAAPDRLTVYRSMRD
ASRTPEPVPAEAPTERGADPIFVVQEHHATRLHYDVRLEREGVLVSWAVPKGPPTDPSRN
HLAVPTEDHPMEYATFEGTIPRGEYGAGQVSIWDHGTYTLEKWKEGEVIAVLHGSAGGGL
GGSVRFALIRTGENWLMHRMDPPAAPDTAAADTAAADDGTAPTTTPTTDEPDGGGPPDAG
RLETVAPMLASRPDGLDPHRDADAWAFEMKWDGVRVVATCDGGAVRLVGRSGKDVTTTYP
EVAEALAGLHLDDAVVDGEVVALGDDGAPSFGRIQQRIGLVRPRDVAAARRAVPVRYVVF
DLLRLGGTDVTGLPYVQRRELLEGLDLDDADRVDVPAAFDGDLDAALASSRELGLEGVVA
KRRSSRYRPGSRSAHWVKLKHEDHVEVVVVGWRPGRGGRTGGVGSLLVAVPDAAGGLRYA
GRVGTGFDERALADLARRLEPLRRDQPTVEAPRDVAREAVWTEAELVGEVTAAGWTDSGH
LRHPVWRGLRADKTVADVEPVADPRPDPS
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgcccagccgcggctcgtcgagcagccagaccgtcacgatcgacggtcggcgcctgcgt
ctgacgaaccccgacaaggtgctgtacccggcgacgggcaccaccaaggccgaggtgatc
tcctactacgtggccgtcgcggaccggctcctcccccacgcctccgggcggccggtcacc
cgcaagcgctggccggacggcgtcggcgctgtcggtgaggcccccggcgggggttccggg
ccacgggcggagaaggcccccggcgggggttccgggccacgggcggagaaggcccccggc
gggggttccgggccacgggcggagaagagcgcagagctcttcttcgagaagaacctgccg
gactccgcgcccgactgggtgcgccgcgtggtggtgcggcacaagagccacgtgaacgtg
tacccgctcgtggacgggccggcggcgctggcgtggctggggcaggtggcggcgctggag
ctgcacgtgccgcagtggcgggtggaggccgacgggacgccgcgccacccggaccggctg
gtgctcgacctcgaccccggcccgggcgtggggctggcggagtgcgtggaggtggcgcac
gcggcgcgcgacctgctggccgacgtcgggctggaggcgttcccggtgacgagcggcagc
aagggcctgcacctgtacgcgcacctgacgggcgagcacgatgccgactacgtgaacgcc
ttcgcgaagcaggtcgctgcggcgctgcaggacgagctgcccgacctcgtggtctcgtcg
atgaagaagtcgttgcgcgagggtcgcgtgctcgtcgactggagccagaacaaccaggcg
aagacgacgatcgcgccgtactcgctgcgcggtcgtgcagcggccgacggggagggtccg
ttcgtcgccgcgccgcggtcgtgggacgagctggggcccgacctgcgtcacctgacgatg
gaggaggtgctcgagcgcgacgacgacccgctcgcgggcctggacccgcagccgacgtcg
ggcgacgaagcacctgtggccgcaccggaccggctgacggtctaccgctcgatgcgcgac
gcgtcgcgcacccccgagccggtgcccgcggaggcgccgacggagcgaggcgccgacccg
atcttcgtggtgcaggagcaccacgccacacgcctgcactacgacgtccggctggagcgc
gagggcgtgctcgtctcgtgggccgtgccgaagggtccgccgaccgacccgagccgcaac
cacctcgccgtccccaccgaggaccacccgatggagtacgcgacgttcgaggggaccatc
ccgaggggcgagtacggcgcggggcaggtcagcatctgggaccacggcacgtacacgctg
gagaagtggaaggagggcgaggtcatcgccgtgctgcacgggtccgcgggcggtgggctg
ggcggcagcgtgcggttcgccctcatccgcaccggcgagaactggttgatgcaccgcatg
gacccgccggcggcccccgacactgcggcagccgacactgcggcagccgacgatggcacc
gcgcccacgaccacgcccacgacggacgagcccgacggcgggggtccgcccgacgccggc
cgcctcgagaccgtcgcgcccatgctcgcgagccggcccgacggcctcgacccgcaccgc
gacgccgacgcctgggcgttcgagatgaagtgggacggcgtccgcgtggtggcgacgtgc
gacggcggggccgtgcggctcgtggggcgcagcggtaaggacgtgacgacgacctacccg
gaggtcgccgaggcgctcgccgggctgcacctcgacgatgccgtcgtcgacggcgaggtc
gtcgcgctcggcgacgacggtgcgccgtcgttcggacgcatccagcagcgcatcgggctc
gtccggccgcgcgacgtcgccgcggcgcgccgggccgtgcccgtgcgctacgtcgtcttc
gacctgctgcggctgggcgggaccgacgtcacgggcctgccctacgtgcagcgccgcgag
ctgctcgagggcctcgacctcgacgacgccgaccgggtcgacgtgcccgccgccttcgac
ggcgacctcgacgccgcgctcgcgtcgagccgggagctgggcctcgagggcgtggtcgcg
aagcggcgcagcagccggtaccggcccggcagccgctcggcgcactgggtgaagctcaag
cacgaggaccacgtggaggtggtcgtggtcgggtggcggcctggccgcggcgggcgcacc
ggcggggtggggtcgctgctcgtcgcggtgcccgacgcggccggtggcctgcgctacgcg
ggtcgcgtgggcaccgggttcgacgagcgcgcgctcgccgacctcgctcgccggctcgag
ccgctgcgccgcgaccagccgaccgtcgaggccccgcgcgacgtcgcccgggaggcggtg
tggaccgaggccgagctcgtcggcgaggtcaccgcggcgggctggaccgactccggccac
ctgcgccaccccgtctggcgcggcctgcgcgccgacaagaccgtcgccgacgtcgagccc
gtcgcggacccccgacccgacccgagctga
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