Aequorivita sp. H23M31: EI546_03815
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Entry
EI546_03815 CDS
T05794
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aev
Aequorivita sp. H23M31
Pathway
aev03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EI546_03815 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aev03400
]
EI546_03815 (ligD)
Enzymes [BR:
aev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EI546_03815 (ligD)
DNA repair and recombination proteins [BR:
aev03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EI546_03815 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
Ndc1_Nup
Motif
Other DBs
NCBI-ProteinID:
QAA80907
UniProt:
A0A410G0W6
LinkDB
All DBs
Position
856129..858840
Genome browser
AA seq
903 aa
AA seq
DB search
MALDKYKKKRDPKITPEPFGGKSEKDVLRFVVQKHAASHLHYDFRLEMEGVLKSWAVPKG
PSTDPQVKRLAMMVEDHPYDYRNFEGIIPQGEYGGGTVIVWDEGTYEPADFDGKTKEEKD
KHLLKELESGKLKFILKGKKLKGEYALVKVHGRGENGWLLMKLKDKYALEEDITKKDKSV
ISKKTIDQVAETSTNILGQSKKKESKASTKKDKIPKEDSKNKDNEAKEDSTKEIDTILKK
AKKAKFPKSIKPMLATLVDEPFDDPDWSNEVKWDGYRSVAYIHNGDVNLSSRNNKSFSEK
YYPITAALEKWNKDAVLDGEIVVIGKDGKADFSALQNWRSEADGNLVYYVFDLLWFDGKN
IMDLPLNERQEVLKAILPTDDDHIHNSEAFITNGIEFFETAKEMKLEGIMAKRKNSRYSP
GNRSKDWLKVKANLRQEVVIGGYTKNEDSPKPFSSLLLGVYEKAKLQYVGKVGTGFTVKK
QKEMMEIFKPLVTSKSPFTTEPDVNQASRFRPDPPKAKATWLTPSLVCEVSFAEITKDGI
FRHPSFKGLRTDKKAKDVVRETASDTEAVVAEEKDDKPKKQKKIIKIPKAKKRQTLLNPT
EETQVKKINGHDLKFTNLSKVYWPEEGYTKRDMFNYYYQIAEYILPYLKDRPLSLYRFPN
GIHGKSFYQKDVKGKAPDWAITYPYTTSDGEDKEFLVGEKEDTLLWAASLGCIEMNPWFS
TIHTPDNPDYCVIDLDPAEKTSFDQVIEAAQEVKKVLDEMKVPGYAKTSGSTGIHIYIPL
DGNYTYDESQMFAKLIASIVQQRLPKFTSIERYTKNRDGKMYIDYLQNRPGATIAAPYSL
RPKVGATVSMPLHWEEIKKGLKMKDFDIKNSVARVREKGDIFRPILKKGINMEDALKNAS
KIS
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggctttagataaatacaaaaaaaagagagatccgaagataaccccagaaccgttcggc
gggaagagtgagaaggatgtattgcgttttgtagttcaaaaacacgccgcttcgcattta
cattatgacttccgattggaaatggaaggggtgctaaaaagctgggcagtgccgaaaggg
ccatctaccgatccgcaagtaaagcgccttgccatgatggtggaggaccatccctatgac
taccgcaactttgaaggtataattccgcagggagaatacggcgggggaacggtgatagta
tgggacgaaggcacctacgagcccgcggattttgacgggaagaccaaggaggaaaaagac
aagcatcttcttaaagagctggaaagcgggaagctgaagtttatacttaaaggcaaaaag
cttaaaggggaatacgcccttgtaaaagtccacggacggggagaaaatggttggctcctg
atgaaactgaaggataaatatgctttggaagaagatatcaccaaaaaagacaaatccgta
atctccaaaaaaaccatcgaccaggttgcggaaacgagtaccaatattctagggcaatcc
aagaaaaaggaatctaaagcttccactaaaaaagataaaatccccaaagaagattcaaaa
aataaagataatgaggcaaaagaggactcaacaaaggaaattgacactattctaaaaaaa
gccaagaaggccaaatttccaaaatccatcaagcctatgctggccaccttggtagatgaa
ccttttgacgatcctgattggagtaatgaagttaaatgggatggataccgctcggtggct
tatattcataatggggatgtaaatctatcttcaagaaataataaatccttttcggaaaaa
tattaccctatcaccgctgccctggaaaaatggaacaaggatgcggtcctagatggtgaa
atagtggttataggcaaagatggcaaggcggactttagtgccttacagaattggcgaagc
gaagccgatggcaatttggtgtattatgtttttgacctgttatggttcgatggcaaaaac
attatggatcttcccttgaacgagcgacaggaagttttaaaagctattttacctaccgat
gatgaccatatccataacagcgaagcctttattaccaatggtatagaattttttgaaact
gctaaggaaatgaagctggaaggcattatggccaaaagaaaaaacagtaggtattcccca
ggcaatcggtccaaggattggttaaaagtaaaagcgaatctaaggcaagaagtagtaata
ggaggatataccaaaaatgaagattcgcctaaaccttttagctcgctccttttgggagtt
tacgaaaaggcaaaactgcaatatgtgggtaaagtaggcacgggatttacggtgaaaaag
caaaaagagatgatggagatttttaagcctttggttacttccaaaagtccgtttaccacc
gaacccgatgtaaatcaggcttcccgatttagaccggacccacctaaggcaaaagccacc
tggcttaccccctctttggtatgtgaggtaagttttgccgaaatcaccaaagacggtatt
ttccgacatccatcctttaagggattgcgtacagacaaaaaggccaaggatgttgttcgg
gaaacggcatcggatactgaagctgttgtagccgaggaaaaggacgacaagccaaagaag
cagaaaaaaataatcaaaattcccaaagccaaaaaacggcagaccttactcaatcccacc
gaggagacccaggtcaagaaaataaacgggcacgatttaaaatttaccaacctcagtaag
gtttattggccagaagaaggatatacaaagcgggacatgttcaactattattatcagata
gccgaatatattctcccttatttaaaagaccggcctttgtccctttatcgttttccgaat
ggcatccatggaaaaagtttctatcaaaaagatgtaaaaggaaaggcgccggattgggcc
attacgtatccatatactaccagtgatggagaggacaaggaatttcttgtaggcgaaaag
gaggataccttattatgggctgcgtccttgggctgtattgaaatgaatccgtggtttagc
accattcacactcctgacaatcccgattattgtgtaatcgatcttgatcccgctgaaaaa
acttcctttgatcaagtaattgaagccgcgcaggaagtgaaaaaagtactggatgagatg
aaagttcccggctatgcgaaaacatctggttccacgggaattcatatttatattccactg
gatggaaactatacgtatgatgaatcccaaatgttcgcaaaattaattgccagcatcgtg
caacaaagactgccaaaattcaccagcattgaacgatataccaagaaccgcgacggaaaa
atgtatattgattatctccaaaaccgccctggggcaaccattgctgccccatactcatta
cggccaaaagtaggtgcaacagtctctatgccactgcattgggaagaaatcaaaaaagga
ctcaaaatgaaagattttgatataaaaaattccgtggcacgagtaagggaaaagggagat
atattccgccccatcttaaaaaaaggaatcaatatggaagatgcactgaaaaacgcatca
aagatttcatag
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