Aequorivita sp. H23M31: EI546_11805
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Entry
EI546_11805 CDS
T05794
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aev
Aequorivita sp. H23M31
Pathway
aev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EI546_11805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aev03400
]
EI546_11805 (mfd)
Enzymes [BR:
aev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EI546_11805 (mfd)
DNA repair and recombination proteins [BR:
aev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EI546_11805 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RimM
RecG_dom3_C
Syntaxin-6_N
Motif
Other DBs
NCBI-ProteinID:
QAA82359
UniProt:
A0A410G527
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All DBs
Position
2673330..2676857
Genome browser
AA seq
1175 aa
AA seq
DB search
MQKTFANSLYSQSPKTRKLQEAIFQFQKEEKQGLRQAQTDNSLQQAQTDKKRPTEISVSG
LIGSSLSMVLAETFKPESSSAELPFLLILNDKEEAAYHLNDLENLLGDKNVLFYPGSYRR
PYQIEETDNANILLRSEVLNRINSRKKPAFIVTYPEALFEKVVTRKELERNTLKIGVNDN
LSIDFVNEVLFEYRFKRTDFVTEPGEFSVRGGILDVFSFSNDEPFRIEFFGDEVDSIRTF
DVETQLSLEQKKKITIIPNIENKIIDESRESFFKYIAAKTVIFIKNEDFFLDAIDGLYKK
ATDAFEALDPIIKRAKPSELFCTGDMLQKQLEDFTTVSLNSKGNRNLKEVSTALNLTKVE
TPLPGGGAGGGTSISFSIRPQPSFNRQFNLLIDNLNDNTEKGYKNYIFCSSEQQAKRFRD
IFRDSDKNVEQFETIVFPIYQGFIDDDLKVVCYTDHQIFERYHKFSLKNGYAKKQAITIK
EISNLEVGDYVTHIDHGIGKFGGLQKIEVEGKMQEAIKLFYGDRDILYVSIHSLHKISKY
NGKDGREPKIYKLGSDAWKKLKAKTKSRVKEIAFNLIELYAKRRTLKGFAFDPDSYLQAE
LESSFIYEDTPDQSTATEDVKRDMENERPMDRLVCGDVGFGKTEVAIRAAFKAVDSGKQV
AVLVPTTILAFQHYKTFSERLSDMPVKVDYLNRFRTAKERRAVLEGLKDGKLDIVIGTHQ
LVNKSVEFKDLGLLVIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARD
LSVITTPPPNRYPVETHVIRFSEEAIRDAISYEIERGGQIFFVHNRIENITEVAGLIQRL
VPDAKVGIGHGQMDGKKLEDLMLRFMNNEFDVLVSTTIIESGLDVPNANTIFINNANNFG
LSDLHQMRGRVGRSNKKAFCYFITPDYSVMTDEARKRITALEQFSELGSGINIAMKDLEI
RGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKEKEFKDLYEDVSSSESIRSGAEGRT
YVKETTIDTDFELLFPDDYVNNITERLNLYTKLNELKNEEELEKFRKELLDRFGELPKQA
EDLLNSIRIKWIAISMGLERVVMKHKKMVGYFVTDQQSAFYQSPSFTKVLQYVQTHPQKV
TMKEKQTRNGLKLLLTFEGVNSVDKALQVLEPFSI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaacatttgctaattcgctctattcccagtctccaaaaacccggaaactgcag
gaagctatttttcaatttcaaaaagaagaaaaacaagggcttcgacaagctcagactgac
aacagtcttcaacaggctcagactgacaaaaaaagaccaactgagatttcagtttcgggt
cttattggttcttctctttcaatggtcttggcagagacttttaaacctgaatcttcctct
gctgaattgccatttctgctaattttaaatgataaggaagaagctgcctaccatttaaat
gatctggaaaatcttttgggagataaaaatgtactgttttatccaggaagttatcgcaga
ccttaccaaatagaggaaacagacaacgcgaacattcttttgcgaagtgaagttttaaat
cgaataaactcccgtaaaaaaccagctttcatcgttacatatcctgaggccttatttgag
aaagtggtcactcggaaagagctagaacgtaataccctaaaaatcggtgttaacgataat
ctttctatcgatttcgtaaacgaggttttatttgaataccggtttaaacgcaccgatttt
gttacagaacccggtgaattttctgttcggggaggaattctggacgtatttagtttcagc
aatgacgaaccgttcaggattgaattcttcggtgatgaagtggatagcatccgcaccttt
gatgtggaaacccagctttcccttgagcaaaagaaaaagattaccattattcccaacatc
gagaataaaataattgatgaaagccgggaatccttctttaaatatatagcagcgaagaca
gttatttttatcaaaaatgaagatttctttctggatgctatcgacggtctctacaagaaa
gcaacagacgctttcgaagcattggatccaattataaaacgcgcaaaaccttcggaattg
ttttgtaccggggatatgcttcagaagcaactagaagatttcaccacagtctcgctcaat
tcaaaaggaaacagaaatttaaaagaggtttcgactgcgctcaacctgacaaaggtcgaa
actcccctccctgggggaggggctgggggtgggacttcgatttcgttttcaatccgtcct
caaccctccttcaaccggcaattcaatttgttgatcgataatttaaacgacaacacggag
aaaggctataaaaattatattttctgtagtagcgaacaacaggcaaaacgctttcgcgat
atttttagggattccgataaaaatgtggagcagttcgaaaccattgttttcccgatatat
caaggatttattgatgacgatttaaaggtggtctgctatacggatcatcagatttttgag
cgctaccacaaattctccttaaagaatggctatgccaaaaaacaggcgattaccattaag
gagatatccaatttggaagttggagattatgtcacccacatagatcacggaattggaaaa
ttcggcggacttcaaaaaatcgaagtggaaggaaaaatgcaggaagccatcaaacttttt
tatggcgatcgggatattctttacgtcagcattcattcgctccacaagatttctaaatac
aatggcaaggatggtcgagagcccaagatctacaaactcggaagtgacgcttggaaaaaa
ctaaaggcaaagactaagtcccgggtcaaagagatagctttcaacttgatcgaactttac
gccaaacggcggactttaaaaggtttcgcattcgatcctgacagctatttgcaggccgaa
ttggaatcgtcatttatttatgaagacacgcccgatcaaagtacagctacagaagatgta
aaacgggatatggaaaacgagcgtcctatggatcgtttggtgtgtggggatgttggtttt
ggaaaaacggaagttgccatccgcgcagcatttaaagccgtggatagcggtaagcaagtt
gcggttttggttccaacaactattttggcttttcaacattataaaacattttctgagcgt
ctttccgatatgccggtgaaagtggattatctcaaccgtttccgcacagcaaaggaaaga
cgcgctgttttggaggggttaaaagatggcaaactcgatatcgtaatcggaacgcatcaa
ttggtaaataaatccgtcgaatttaaagatttgggtcttttagtaattgacgaggagcag
aagttcggtgttgcggttaaggataaactgaaaactatcaaggaaaatgtcgatacactg
actttaaccgccacacctattccaaggacattgcaattcagtttaatggcagcgcgggat
ctttcggtaattacaacgccgcctccaaatagatatcctgtagaaacacacgtgatccgg
ttttctgaggaagctattcgcgatgccattagttatgagattgaaaggggaggacaaatt
ttctttgtgcacaaccgaatagagaatattacagaagtggctggattaatccaacgtttg
gttcctgacgctaaagtaggaatcggccacggacagatggatggaaaaaaacttgaggat
ttgatgctccggtttatgaacaatgaatttgatgtccttgtttctactacaattattgag
agcgggcttgacgttcccaatgccaatacaattttcatcaacaatgcgaataacttcgga
ctttcagatttacatcaaatgagaggccgtgtgggccgaagcaataaaaaggctttctgt
tattttatcacaccagattattctgtgatgaccgacgaagccagaaagcgaatcaccgca
ttggaacaattttcagaattgggaagcggaataaatatcgcgatgaaggatttagaaatc
cgtggtgcgggagatttgctcggaggtgaacaaagcggatttattaatgaaatagggttt
gaaacatatcaaaaaatccttgcggaagcgattgatgaattaaaggaaaaggaatttaag
gatttgtatgaggatgtctcctcgtcggagtctatccggagcggagccgaagggcggact
tacgttaaggaaacaacaattgatactgattttgaacttctttttccggatgattatgtt
aataatattaccgaacgtctaaatctctacaccaaactgaatgagctaaaaaatgaggag
gagcttgagaaattcagaaaggaattgctggatcgttttggagaattgccaaaacaagct
gaggatcttcttaatagtattcgaataaagtggatcgcaatttcgatgggactcgaacgc
gttgtgatgaaacacaaaaagatggttggatattttgtaacagaccaacaaagtgcattt
tatcaaagcccttcttttactaaagttttgcaatacgttcagacccatccacaaaaagtt
acaatgaaagaaaaacagaccagaaatggcttgaaattacttttgactttcgaaggcgtt
aattctgtggataaagcgctacaggttttggagcctttttcaatttaa
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