Aeromicrobium chenweiae: C3E78_03970
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Entry
C3E78_03970 CDS
T05410
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aez
Aeromicrobium chenweiae
Pathway
aez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3E78_03970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aez03400
]
C3E78_03970 (mfd)
Enzymes [BR:
aez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3E78_03970 (mfd)
DNA repair and recombination proteins [BR:
aez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3E78_03970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AWB91444
UniProt:
A0A2S0WJI1
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All DBs
Position
808081..811605
Genome browser
AA seq
1174 aa
AA seq
DB search
MNLQPLATLVATEPTIAQALDDRRDGLRELQLQAPEPLRPFLVHALAQQSTVVAVTATAR
EAEDLTTQVGELLGADAVVHFPAWETLPHERLSPRSDTVGRRLAVLRRLVHPTDPSALDS
DTSTGPVRVVVAPIRSLLQPQVKGLADLVPVELHQGDQVELEQVVRDLAAAAYSRVDLVE
RRGEFAVRGGIIDVFPPTEEHPLRIEFFGDEVDEIRRFAVADQRTLESVTHVWAPPCREL
LLTDEVRAKAAQLADEHPSLVEIFTKISQGHAVEGMESLTPVLTDEMESFVNLLPERSAI
LLMDPERIKARAADLVATSEEFLQASWAAAAGGGESPIDLGSAAFRSLDEVREETLGLGH
TWFSQSPFGLDLDEGSRAVEMEAAAAYRGDTAAALADIKQWVGAGMRVVFVAPAHGQAQR
AGEWLSENDVASALDDGVTAPSPGVVQISCGELSHGLVSAPLQLAVMTYDDLVGQRTADR
TERKMPARRRKQVDPLELRTGDFVVHEQHGLGKYIELTQRVVQGAAREYLVIEYAPSKRG
QPADRLFVPMDQLDQISRYVGGESPSLDRLGGSDWTSRKNKARKAVRQIAGELIKLYAAR
QATKGHAFGPDTPWQAELEDSFAFVETPDQMITIDEVKRDMERTVPMDRLVCGDVGYGKT
EIAVRAAFKAIQDGKQVILLVPTTLLVQQHFATFAERFGQFPVTMKPLSRFQTEKETKET
LAGLADGSIDMVIGTHRLLQPGVKIKDLGLVIVDEEQRFGVEHKEAMKMLRAAVDVLSMS
ATPIPRTLEMAITGIREMSTIATPPEERHPVLSFVGPYEDRQVIAAIRRELLREGQAFYI
HNRVQSIDKAVARIKELVPEARVAAAHGQMGEHQLEEVMVDFWEKRYDVLVCTTIVESGL
DVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPPEKPLTETAHDRLATIAQ
HSELGGGMAVAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRGDAEPERE
VKIELPIEAHLPHDYVGSERLRLEMYKRLADVRELSEVDEIRVELVDRYGEPPEAVDVLL
DVARLRVRVREAGLTEVTAAGPNIRFAPLKLPDSAQMRLQRVYPRSTYKVAAEVALVPRP
KTAAVGGKPLVGRELLEWTRTVIDTLVPAAVPAA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcagcccctcgcgactctcgtcgccaccgaacccaccatcgcgcaggcactg
gacgatcggcgggacgggctgcgggagctgcagctccaggcccccgagccgttgcggccg
ttcctcgtccacgcgttggcgcagcagtcgacggtcgtcgcggtgaccgcgaccgcccgc
gaggccgaggacctgaccacccaggtcggcgagctgctgggtgccgacgcggtggtgcac
ttcccggcgtgggagaccctgccgcacgagcgcctctcgccccgttcggacaccgtgggc
cgccggctggcggtgctgcgccgcctggtgcacccgaccgacccgtcggcgctcgactcc
gacaccagcaccggcccggtccgcgtggtcgtggcgccgatccgctcgctgctgcagccg
caggtcaagggcctggccgacctcgtccccgtcgagctgcaccagggtgaccaggtcgag
ctcgagcaggtcgtgcgcgacctggccgccgccgcgtactcgcgggtcgacctggtcgag
cgtcgcggtgagttcgccgtgcgcggcggcatcatcgacgtgttcccgccgaccgaggag
cacccgctgcgcatcgagttcttcggcgacgaggtggacgagatccgccgcttcgcggtg
gccgaccagcgcacgctcgagtcggtcacccacgtctgggcaccgccgtgccgcgagctg
ctgctgaccgacgaggtgcgcgccaaggccgcgcagctcgcggacgagcacccgtccctg
gtcgagatcttcaccaagatctcccagggccacgcggtcgagggcatggagtcgctgacg
cccgtgctcaccgacgagatggagtcgttcgtcaacctgctgccggagcgctcggcgatc
ctgctgatggaccccgagcgcatcaaggcccgcgccgccgacctcgtcgcgaccagcgag
gagttcctgcaggcgtcctgggcggcggccgccgggggtggcgagtcgccgatcgacctc
ggctcggccgcgttccggtcgctcgacgaggtccgcgaggagaccctgggactgggccac
acctggttctcccagtcgccgttcggactcgacctggacgagggatcgcgggcggtcgag
atggaggccgccgccgcgtaccgcggtgacaccgccgccgcgctcgcggacatcaagcag
tgggtcggcgcgggcatgcgcgtcgtcttcgtcgcgccggcgcacggccaggcccagcgc
gcgggggagtggctgtccgagaacgacgtcgcgtccgcactcgacgacggggtcaccgcg
ccctcgccgggcgtcgtgcagatcagctgcggcgagctctcccacggcctcgtctcggct
ccgctgcagctggcggtcatgacgtacgacgacctcgtcggccagcgcaccgccgatcgc
accgagcgcaagatgccggcccggcgccgcaagcaggtcgatccgctcgagctgcggacc
ggcgacttcgtcgtccacgagcagcacggcctgggcaagtacatcgagctgacccagcgc
gtcgtccagggcgcggcccgcgagtacctcgtgatcgagtacgccccgtccaagcgcggc
cagcccgccgaccggctgttcgtcccgatggaccagctcgaccagatcagccggtacgtc
ggcggtgagtccccgtcgctggaccggctcggcggctcggactggaccagccgcaagaac
aaggcccgcaaggccgtccggcagatcgccggcgagctcatcaagctgtacgcagcacgg
caggcgaccaagggccacgccttcggcccggacacgccctggcaggccgagctcgaggac
tccttcgcgttcgtcgagacgcccgaccagatgatcacgatcgacgaggtcaagcgcgac
atggagcgcaccgtcccgatggaccgcctggtctgcggcgacgtcggctacggcaagacc
gagatcgcggtgcgtgcggcgttcaaggccatccaggacggcaagcaggtcatcctgctc
gtgccgaccacgctcctcgtgcagcagcacttcgcgacgttcgccgaacggttcgggcag
ttcccggtcacgatgaagccgctgtcgcggttccagaccgagaaggagaccaaggagacg
ctcgccggcctggccgacgggtcgatcgacatggtcatcggcacgcaccggctgctgcag
ccgggcgtgaagatcaaggacctgggcctggtgatcgtcgacgaggagcagcggttcggc
gtcgagcacaaggaggccatgaagatgctgcgcgcggccgtcgacgtgctgtcgatgtcc
gcgacgcccatcccgcgcaccctggagatggcgatcaccggcatccgcgagatgtcgacg
atcgcgaccccgccggaggagcgccacccggtgctgtcgttcgtcggcccgtacgaggac
cggcaggtcatcgctgcgatccggcgcgagctgctccgcgaggggcaggcgttctacatc
cacaaccgggtgcagagcatcgacaaggccgtggcccggatcaaggagctggtgccggag
gcgcgcgtcgccgcggcgcacggccagatgggcgagcaccagctcgaggaggtcatggtc
gacttctgggagaagcgctacgacgtcctggtctgcaccacgatcgtcgagtcgggcctc
gacgtgtccaacgccaacacgatgatcatcgagcgcgccgacacgctgggcctctcgcag
ctgcaccagctgcgtggccgcgtcggacgctcgcgcgagcgcgcctacgcgtacttcctg
tacccgccggagaagccgctgaccgagaccgcgcacgaccggctggcgacgatcgcccag
cactccgagctcggcggcggcatggccgtggcgatgaaggacctcgagatccgcggcgcc
ggcaacctgctgggcggcgagcagtcgggccacatcgccgacgtcggcttcgacctgtac
gtgcggctcgtgggggaggccgtcgcggagttccgcggcgacgccgagcccgagcgcgag
gtcaagatcgagctgccgatcgaggcgcacctgccgcacgactacgtgggcagcgagcgt
ctgcggctcgagatgtacaagcgtctcgcggacgtccgcgagctcagcgaggtcgacgag
atccgcgtcgagctggtggaccgctacggcgagccgcccgaggccgtcgacgtcctgctc
gacgtcgcccggctgcgggtgcgggtgcgggaggcaggcctcaccgaggtcaccgcagcc
ggaccgaacatccggttcgcgccgctcaagctccccgactcggcacagatgcggctgcag
cgggtctatccgcgcagcacgtacaaggtcgccgccgaggtcgccctcgtcccgcggccc
aagaccgccgcggtcggcggcaagccgttggtcgggcgcgagctgctcgagtggacccgg
accgtcatcgacacgctcgtcccggcagccgtccccgccgcctga
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