Anoplopoma fimbria (sablefish): 129088846
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Entry
129088846 CDS
T09102
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129088846 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
129088846 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129088846 (thoc1)
03041 Spliceosome [BR:
afb03041
]
129088846 (thoc1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
129088846 (thoc1)
Spliceosome [BR:
afb03041
]
Complex C
Other components
EJC/TREX
129088846 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129088846 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
YfhD
Motif
Other DBs
NCBI-GeneID:
129088846
NCBI-ProteinID:
XP_054452062
LinkDB
All DBs
Position
3:7088893..7096269
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AA seq
655 aa
AA seq
DB search
MMSPSLFNFVDAKDKFTASARHALVGKTSKPLVNVFNQFPGNEAEKKTTLDQALRGVLGD
QIVEQNVSCEQYLSLIYLSIDAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTFGQKPTEEKEDGMDVEEGEMGEEEAPAPCSIPIDYNLYRKFWT
LQDYFRNPVQCYDKFSWMTFLKFSDETLAVFKSYKLDDMQASKRKLEELRASGGEHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSGCVLNDDQTTWIEETTKL
VFQLLKEIPPDGDKFATMVEHILGTEENWNGWKNEGCPSFVKERTVDDKPKRPTRKRQAP
EDFLGKGPDSKIFMGNDELTRLWNLNHDNMEACKSDSREFMPSLDEFFAEAIEQADPANM
VEEEYKAVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPS
EEIKTGEEDDDDNGDNLLKDSNDSPSIQSKTVTNQQMDDIAAKLGAQWKTLASHLEMKAA
ELREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFSQIADNLSEA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgccttcgctatttaattttgtcgacgctaaagacaaattcacggcgtctgcc
aggcatgcactagtgggtaaaaccagcaaacctttggtgaatgtgttcaaccagttccct
gggaatgaggcagagaagaagaccaccctcgaccaggctctgagaggagtcctcggtgat
cagattgttgagcagaatgtgagctgtgaacaatacttgtctctcatctacctgagtatt
gatgcagtgacagaaggtatctgttccgctacaactcctttccttctgctgggagatgta
ctggactgtctccccctcgaccagtgcgacaaaatattctcttttgttgaagagaatgtc
tccacctggaaatcgaactctttttacactgccgggaagaactacctgttgaggatgtgt
aatgaccttttaaggaggctgtccaaatcccagaatacggtgttctgtgggcgaatccag
ctcttcctggcacgtctcttccctctgtctgaaaaatcaggtctcaatctgcagagccag
tttaatctggacaatataacagtgttcaacaagaatgaacaagaaagcacttttggccag
aagcccacagaagaaaaggaagatggaatggatgtggaggagggagaaatgggagaggag
gaagctcctgctccatgttccattccaatcgactacaacttgtacagaaagttctggaca
ctgcaggactacttcagaaaccctgtgcagtgttacgataaattctcttggatgacattt
cttaagttctcagacgaaaccttggcggtgttcaagagctataaattggacgacatgcag
gcctctaagagaaagctggaggagctgagagcatccggaggagagcatgtctactttgcc
aagtttctaacaagtgaaaagctgatggacttgcagctcagcgacagcaacttcaggcgg
cacattctactgcagtacctcatcctcttccagtacctgaagggtcaggtcaaattcaaa
agctctggctgtgttctgaatgatgaccagactacatggattgaagagacaactaaactg
gttttccagctgctgaaagagatccctcctgatggtgacaagtttgccaccatggttgaa
catatcctcggcacagaggagaactggaatggctggaaaaacgagggatgcccgagcttt
gtgaaagaaaggacggtagatgacaaacccaaaaggccgaccaggaaaagacaagctcca
gaagactttcttggaaaagggccagactccaagatcttcatgggaaatgatgagttgact
cgactgtggaacctgaaccatgacaacatggaggcctgcaagtcagacagcagggagttc
atgccatcactggacgagttctttgcggaggccattgaacaggccgatcctgctaacatg
gtggaggaagagtacaaggctgtgcgaaacccaaactacggctggcgcgctctgaggctg
ctgtccaggagaagtccacacttctttcaaccgactaaccagaagttcaagagcctcgca
gactacctagacagcatggtcagcaaactggccaaagaactgccgaaggatattccctcc
gaagagatcaagacaggagaagaggatgacgacgacaacggagacaatcttctcaaagac
agcaacgacagtccgagcatacagagcaagactgtgactaaccagcagatggacgacatc
gcagccaaactgggtgctcagtggaagacgctggcatctcacttggagatgaaggcggcg
gagctgcgagagattgaaacggacagcgaagacgttgacatgcaggccaaactgctgctc
gtggcctggcaggacagagagggaacccaagctactgtggagagcttggtcacagctctc
aacgctgcaggattctctcagattgcagacaacctcagtgaggcttaa
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