Anoplopoma fimbria (sablefish): 129089026
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Entry
129089026 CDS
T09102
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03030
DNA replication
afb03410
Base excision repair
afb03420
Nucleotide excision repair
afb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129089026 (lig1)
03410 Base excision repair
129089026 (lig1)
03420 Nucleotide excision repair
129089026 (lig1)
03430 Mismatch repair
129089026 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129089026 (lig1)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129089026 (lig1)
Enzymes [BR:
afb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129089026 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
129089026 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129089026 (lig1)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129089026 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129089026 (lig1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129089026 (lig1)
NER (nucleotide excision repair)
Other NER factors
129089026 (lig1)
MMR (mismatch excision repair)
Other MMR factors
129089026 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
eIF-3c_N
Motif
Other DBs
NCBI-GeneID:
129089026
NCBI-ProteinID:
XP_054452318
LinkDB
All DBs
Position
3:4873644..4919310
Genome browser
AA seq
1040 aa
AA seq
DB search
MQRSIASFFQPKIQDKNIQKKAKDEPVKKPVKSPLKVQNGVREADSPVKKVAKRSRQILD
SDDDEAPVVKEQVAAKGQGDKEAADKKEKKDDVFKAVPTPLSPPPAPATPLSPPPAPATP
VTPATPATPSSSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDESRSESQKDEAEAKE
EQGQQNKRPRVESSAGSAGNTDEPMEEGVKEECVEKAVAEANSPDEEVEKKNKKKEEGEQ
EQQEEEEEERVKRKSSDEKVKKAEGAEKKNEAREKTDDEKGPAVAKKKKKKVVEEEEEEE
VVVEKDTQEGKESPKSQTARKQKEPKEQKDKEPLKKAPISSFFAPRKAAVKTEKPENNEG
EKKTTSAERKSSAEESKDTKGESTSGPTDYDPSRANYHPVDHACWKQGQKVPYLAVARTF
EKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCLYLCLNQLGPAYLGMELGVGETVLMK
AVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSG
NSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGF
PPAVLDAGKRMSAESRRAWIEEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTP
GVPLRPMLAHPTKGVGEVMKRFDDSTFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTS
KYPDIISRIPKMKKDSVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVC
VYAFDLLYLNGESLVRQPLCRRRALLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVR
DSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYMGKGKRTGTYG
GFLLACYDEDNEEFQSICKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWL
DAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADL
YKKQQQIQNQGEKNDPEDYY
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttcttccagcccaagatccaggacaagaacattcagaag
aaagccaaagatgaacctgtgaaaaaacctgtcaaaagccccctcaaggtgcagaacggc
gtccgggaggccgattcgcccgtcaagaaggtggccaaacgcagccgtcagatcctggac
agcgacgatgacgaggcgcccgtcgttaaagagcaggtcgctgccaagggacaaggagac
aaggaagctgctgataaaaaagaaaagaaggatgacgtctttaaggccgttcccacccct
ctgtctcctccacctgcaccagccacccctctgtctcctccacctgcaccagccacccct
gtgactcccgccaccccggccaccccgtcctcgtctgcttcacccgggacccccagcacc
cccaactccatctccccctctgggatcgtcaaacgcaagacggcgaggaagatgttcccc
aagaggaagcttgatgagagcaggagcgagagccagaaagacgaggcggaggccaaggag
gagcagggtcagcaaaacaagcgaccccgcgtggagagcagcgccggcagcgcagggaac
accgatgaacccatggaggagggtgtgaaggaagaatgtgtggaaaaggcagtggccgag
gctaacagcccagatgaagaggtggagaagaagaacaagaagaaagaggaaggagagcag
gagcagcaggaggaggaggaggaggagcgcgtgaaaagaaagagctctgatgagaaagta
aagaaagctgagggggcggaaaagaaaaatgaagcgagggagaagacggatgatgagaaa
gggcccgccgttgccaagaagaagaagaagaaggtggtggaggaggaggaggaggaggag
gtggtggttgaaaaggacacgcaagagggaaaagagagcccaaaaagtcaaacggcgaga
aagcagaaagaaccaaaagagcagaaagataaggagccactcaagaaagctcccatcagc
agtttctttgctccaagaaaagctgcagtgaagacggagaaaccagagaacaatgaaggg
gagaagaagacgacgagcgccgagaggaagagttcagcggaggagagcaaagacacgaaa
ggcgagtcaacctcaggaccaacggactacgatccatccagggccaactaccaccccgtg
gaccacgcctgctggaaacagggccaaaaagtgccgtacttggcggtggctcgcaccttt
gagaagattgaagaggactctggcaggctgaggaacatcgagacgctgtccaacctgctc
cgctccgtgctgctgctctctccagacgacttgttgtgctgtttgtacctgtgtttgaac
cagctgggtccagcctacctggggatggagctcggtgtcggagagacggtgctgatgaaa
gctgttgctcaagcaactgggcgacaattggacaaaatcaaggcggaggcgcaggagaaa
ggagatctgggcctcgtggccgagagttcccgtagcaaccagcgcatgatgttccagccg
gccagtctgacagcggggggcgtgttcagaaaattgaaggaaatcgcaagcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttt
tccgaggcccgctacatcgtcaggtcgctggctgggaagctgaggatcggcctggctgag
cagagtgtcctatcagctctgagccaggctgtgtgcctgaccccccctggacaaggtttc
ccccccgctgtgctcgacgcggggaagaggatgagcgctgagagcaggcgggcctggatc
gaagagaagagtctcattctcaaacagacttactgcgagatgcccaattacgacgtcctc
atccccgttctgctgaaagaaggcatagacgagctgcccaatcactgcaagctcactcca
ggtgtgccgctgagacccatgttggctcaccccaccaaaggcgtcggcgaggtgatgaag
aggtttgacgattccacgttcacctgcgagtacaaatacgacggcgagcgcgcacagatt
cacattctggagaacggcgaggttcgagtattcagccgcaaccaggaagacaacaccagc
aaataccccgatatcatctctcgcatccccaagatgaagaaggactccgtggtttcctgc
gtcctggactctgaggcggtggcctgggatcgtgagaagaagcagatccagcccttccag
gtcctcaccacccgcaagagaaaggacgtggatgcctcggagatcaaagtccaagtgtgt
gtgtacgcctttgacctcctctatctcaacggcgagtcccttgtgcgacagccgttgtgt
cggcgtcgggctctgctgaaagaaagtttctcagaagtggagggagagtttgtgttcgcc
cgatccatcgactccgacaacacagacgccatcgcagagttcctggagcagtctgtccga
gactcctgcgagggtctgatggtgaagactctggagaaggatgccacctatgaaattgcc
aagcgctcccacaactggctcaagctgaaaaaggactacctggacggcgttggggacacg
gttgacctgtgtgtgatcggggcctacatggggaaaggcaagaggacgggcacctacggc
ggcttcctgctcgcctgctacgacgaggacaacgaggagttccagtccatctgcaagatc
gggacaggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcacatt
ctgcctaaaccccgcgcctactaccgcatcgaccaatcagcagagcccgacgtgtggctg
gacgccgtgcaggtttgggaggtgaagtgcgccgacctgtcgctgtcgcccatctacaag
gccgccatgggattggtggatccagaaaagggcatttctctgaggtttccccgcttcctt
cggatcagagacgacaagaagcctgaggacgccacgactggagctcagattgctgatttg
tacaagaagcagcagcagattcagaatcagggggagaaaaacgacccggaggactactac
tga
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