KEGG   Anoplopoma fimbria (sablefish): 129089026
Entry
129089026         CDS       T09102                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03030  DNA replication
afb03410  Base excision repair
afb03420  Nucleotide excision repair
afb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129089026 (lig1)
   03410 Base excision repair
    129089026 (lig1)
   03420 Nucleotide excision repair
    129089026 (lig1)
   03430 Mismatch repair
    129089026 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afb03032]
    129089026 (lig1)
   03400 DNA repair and recombination proteins [BR:afb03400]
    129089026 (lig1)
Enzymes [BR:afb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     129089026 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     129089026 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     129089026 (lig1)
DNA replication proteins [BR:afb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    129089026 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     129089026 (lig1)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     129089026 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     129089026 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     129089026 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C eIF-3c_N
Other DBs
NCBI-GeneID: 129089026
NCBI-ProteinID: XP_054452318
LinkDB
Position
3:4873644..4919310
AA seq 1040 aa
MQRSIASFFQPKIQDKNIQKKAKDEPVKKPVKSPLKVQNGVREADSPVKKVAKRSRQILD
SDDDEAPVVKEQVAAKGQGDKEAADKKEKKDDVFKAVPTPLSPPPAPATPLSPPPAPATP
VTPATPATPSSSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDESRSESQKDEAEAKE
EQGQQNKRPRVESSAGSAGNTDEPMEEGVKEECVEKAVAEANSPDEEVEKKNKKKEEGEQ
EQQEEEEEERVKRKSSDEKVKKAEGAEKKNEAREKTDDEKGPAVAKKKKKKVVEEEEEEE
VVVEKDTQEGKESPKSQTARKQKEPKEQKDKEPLKKAPISSFFAPRKAAVKTEKPENNEG
EKKTTSAERKSSAEESKDTKGESTSGPTDYDPSRANYHPVDHACWKQGQKVPYLAVARTF
EKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCLYLCLNQLGPAYLGMELGVGETVLMK
AVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSG
NSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGF
PPAVLDAGKRMSAESRRAWIEEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTP
GVPLRPMLAHPTKGVGEVMKRFDDSTFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTS
KYPDIISRIPKMKKDSVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVC
VYAFDLLYLNGESLVRQPLCRRRALLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVR
DSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYMGKGKRTGTYG
GFLLACYDEDNEEFQSICKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWL
DAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADL
YKKQQQIQNQGEKNDPEDYY
NT seq 3123 nt   +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttcttccagcccaagatccaggacaagaacattcagaag
aaagccaaagatgaacctgtgaaaaaacctgtcaaaagccccctcaaggtgcagaacggc
gtccgggaggccgattcgcccgtcaagaaggtggccaaacgcagccgtcagatcctggac
agcgacgatgacgaggcgcccgtcgttaaagagcaggtcgctgccaagggacaaggagac
aaggaagctgctgataaaaaagaaaagaaggatgacgtctttaaggccgttcccacccct
ctgtctcctccacctgcaccagccacccctctgtctcctccacctgcaccagccacccct
gtgactcccgccaccccggccaccccgtcctcgtctgcttcacccgggacccccagcacc
cccaactccatctccccctctgggatcgtcaaacgcaagacggcgaggaagatgttcccc
aagaggaagcttgatgagagcaggagcgagagccagaaagacgaggcggaggccaaggag
gagcagggtcagcaaaacaagcgaccccgcgtggagagcagcgccggcagcgcagggaac
accgatgaacccatggaggagggtgtgaaggaagaatgtgtggaaaaggcagtggccgag
gctaacagcccagatgaagaggtggagaagaagaacaagaagaaagaggaaggagagcag
gagcagcaggaggaggaggaggaggagcgcgtgaaaagaaagagctctgatgagaaagta
aagaaagctgagggggcggaaaagaaaaatgaagcgagggagaagacggatgatgagaaa
gggcccgccgttgccaagaagaagaagaagaaggtggtggaggaggaggaggaggaggag
gtggtggttgaaaaggacacgcaagagggaaaagagagcccaaaaagtcaaacggcgaga
aagcagaaagaaccaaaagagcagaaagataaggagccactcaagaaagctcccatcagc
agtttctttgctccaagaaaagctgcagtgaagacggagaaaccagagaacaatgaaggg
gagaagaagacgacgagcgccgagaggaagagttcagcggaggagagcaaagacacgaaa
ggcgagtcaacctcaggaccaacggactacgatccatccagggccaactaccaccccgtg
gaccacgcctgctggaaacagggccaaaaagtgccgtacttggcggtggctcgcaccttt
gagaagattgaagaggactctggcaggctgaggaacatcgagacgctgtccaacctgctc
cgctccgtgctgctgctctctccagacgacttgttgtgctgtttgtacctgtgtttgaac
cagctgggtccagcctacctggggatggagctcggtgtcggagagacggtgctgatgaaa
gctgttgctcaagcaactgggcgacaattggacaaaatcaaggcggaggcgcaggagaaa
ggagatctgggcctcgtggccgagagttcccgtagcaaccagcgcatgatgttccagccg
gccagtctgacagcggggggcgtgttcagaaaattgaaggaaatcgcaagcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttt
tccgaggcccgctacatcgtcaggtcgctggctgggaagctgaggatcggcctggctgag
cagagtgtcctatcagctctgagccaggctgtgtgcctgaccccccctggacaaggtttc
ccccccgctgtgctcgacgcggggaagaggatgagcgctgagagcaggcgggcctggatc
gaagagaagagtctcattctcaaacagacttactgcgagatgcccaattacgacgtcctc
atccccgttctgctgaaagaaggcatagacgagctgcccaatcactgcaagctcactcca
ggtgtgccgctgagacccatgttggctcaccccaccaaaggcgtcggcgaggtgatgaag
aggtttgacgattccacgttcacctgcgagtacaaatacgacggcgagcgcgcacagatt
cacattctggagaacggcgaggttcgagtattcagccgcaaccaggaagacaacaccagc
aaataccccgatatcatctctcgcatccccaagatgaagaaggactccgtggtttcctgc
gtcctggactctgaggcggtggcctgggatcgtgagaagaagcagatccagcccttccag
gtcctcaccacccgcaagagaaaggacgtggatgcctcggagatcaaagtccaagtgtgt
gtgtacgcctttgacctcctctatctcaacggcgagtcccttgtgcgacagccgttgtgt
cggcgtcgggctctgctgaaagaaagtttctcagaagtggagggagagtttgtgttcgcc
cgatccatcgactccgacaacacagacgccatcgcagagttcctggagcagtctgtccga
gactcctgcgagggtctgatggtgaagactctggagaaggatgccacctatgaaattgcc
aagcgctcccacaactggctcaagctgaaaaaggactacctggacggcgttggggacacg
gttgacctgtgtgtgatcggggcctacatggggaaaggcaagaggacgggcacctacggc
ggcttcctgctcgcctgctacgacgaggacaacgaggagttccagtccatctgcaagatc
gggacaggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcacatt
ctgcctaaaccccgcgcctactaccgcatcgaccaatcagcagagcccgacgtgtggctg
gacgccgtgcaggtttgggaggtgaagtgcgccgacctgtcgctgtcgcccatctacaag
gccgccatgggattggtggatccagaaaagggcatttctctgaggtttccccgcttcctt
cggatcagagacgacaagaagcctgaggacgccacgactggagctcagattgctgatttg
tacaagaagcagcagcagattcagaatcagggggagaaaaacgacccggaggactactac
tga

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