Anoplopoma fimbria (sablefish): 129094867
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Entry
129094867 CDS
T09102
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
afb01002
]
129094867 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129094867 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129094867 (usp13)
Enzymes [BR:
afb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
129094867 (usp13)
Peptidases and inhibitors [BR:
afb01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
129094867 (usp13)
Ubiquitin system [BR:
afb04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
129094867 (usp13)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129094867 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
129094867
NCBI-ProteinID:
XP_054459133
LinkDB
All DBs
Position
8:17846725..17874672
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AA seq
863 aa
AA seq
DB search
MAADLGELLVPYMPTVRVPRTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKATGAAAGAIPRRRNGKVFLDLELNRDFNGEDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAVLNAPSAYKKQEPESWDEEIQVSKHARSLRQLD
NGVRIPPSGWKCQKCEMRENLWLNLTDGTVLCGKWFFDGSGGNGHALEHYKETKYPLAVK
MDTITPDGADVYSFEEEEAVLDPHISEHLSHFGIDMLQMQKKTENGHHTDNNSRPRVSEW
EVIQESGMKLKAVFGSGYTGLKNLGNSCYLGTVMQVLFSIPDFQRMYVGNLQRIFDYSPL
DPSQDFATQMAKLGHGLLSGQFSKPPMKSELIEQVMKEEYKVLNLHQQKGVSPRMLKALV
SRGHPEFSSNRQQDAHEFLLHIINVVERNSAGSENPSDVFRFLVEERIQCCQTRRVRYAQ
RVDYCIQLPAPFEAATNREELMAYETKRREAEEKMWAPPEPVRARIPFTACLQAFTEPEN
VPDFWSSALQAKSAGVKTSRFASFPEYLVLQIKKFTFGVDWVPKKIDLAIDVPDFLDLSR
LRATGLQASEEELPDLMPPIVLAEDTRDNSMGSTDSPEIDEAAAMQLAEMGFPLEACRKA
VYYTGNMGPEMAFNWIIAHMEEPDFAEPLTLPSIIDPGPSISDSPMVTTPLGNSPPEESI
SILTSMGFPRAHSIQALKATNNNLERALDWIFTHPEEEESDALSEMADTEPNDNAFSNAN
SHSDPTLSPDRDASGPRVKDGPGRYELFAFISHMGASTMSGHYVCHIKKEGRWVIYNDHK
VCLSERPPKDLGYIYFYHRLSSS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacctcggagagctgctggtcccgtacatgcccaccgtcagagtgcccaga
acgggagacagggttttcaagagcgagtgcgccttttccttcgactcgcccgagtcggag
ggaggcctctatgtgtgcatgaacacattcctgggcttcggaagagaacatgtggagaga
cattatcgcaaaacaggacagagcgtttacatgcacctcaaacgacatgtcaaagagaaa
gccacaggagctgcagcaggcgccatccccagacgaagaaatggaaaagtgtttctcgat
ttagagctaaatcgtgattttaacggagaggactatgaatatgaagacgaggccaagctc
gtaatttttccagaccacttcgagatccccttaccaaatattgaggagttgcccgctctg
gtgaccatcgcctgtgatgcagtgctcaatgcaccgtcagcttacaagaagcaggaacct
gaatcctgggacgaggagatccaggtttccaaacatgccaggagcctcagacagctggac
aatggggtcaggatcccacccagcggctggaagtgtcagaagtgcgagatgagagaaaac
ctgtggctgaacctgaccgatggaacagtgctctgtgggaagtggttctttgacgggagc
ggaggaaacggccacgccctggagcactacaaagagaccaaataccccctggctgtcaaa
atggacaccatcaccccagatggagcagatgtctactcgtttgaggaagaggaagctgtg
ttggaccctcacatatcagaacacttgtcacactttgggattgacatgctacagatgcag
aaaaaaacagagaacggtcaccacacagacaataactcccggccgcgggtcagtgaatgg
gaggtgatccaggagtcgggcatgaagctgaaagcggtgtttggttctggttacacaggc
ctcaaaaacctgggcaacagctgctaccttggcacagtgatgcaggtcctcttcagcatc
ccagacttccagaggatgtatgtgggtaatcttcagaggatattcgactattcacccctt
gaccccagccaggacttcgccacacaaatggctaaactgggacatggactgctctcaggc
cagttctccaaaccacccatgaaatctgagctcattgaacaggtgatgaaagaagaatac
aaggtattaaacttgcaccagcagaaaggcgtctctcctcgaatgttgaaggccctggtc
agccggggacatccagagttttcctctaacagacagcaagacgcccacgagttcctcctg
cacatcatcaacgtggtggagaggaatagcgccggctcagagaatccaagtgacgtcttc
cgcttcctggtagaggagcgaattcagtgctgccagacacgccgggttcgttatgctcaa
cgggtggactactgcatccagctgccagctccctttgaggcggccaccaatcgagaggag
ctgatggcatacgagaccaagaggagggaggctgaggagaaaatgtgggctcctccagag
cccgttagagcacggatccccttcaccgcctgcctgcaggccttcacagagccggagaac
gtccccgacttctggagctcagcgctgcaggccaagtcagctggagtgaaaacttcccgt
ttcgcctccttcccagagtatctggttttgcagatcaagaaattcacatttggggttgac
tgggtgccgaagaaaatagacttggccattgatgttccagacttcctggatctgagcagg
ctgcgggccacagggctgcaggcgagcgaagaggagctgcctgacctcatgcctcccatc
gtgctagctgaagacaccagagataactccatgggctccacagactctccagaaatcgac
gaggcggcagcaatgcagctggcagagatgggctttccgctggaggcctgtaggaaggcg
gtctactacacaggcaacatgggcccagagatggccttcaactggatcatagcccacatg
gaggagcctgactttgcagagcctctcactctgccctccataattgatcccggtccctcc
atcagcgacagccctatggtcaccaccccgctgggcaactcgccccctgaggagagcatc
tccatcctcacgtcaatgggcttcccccgtgctcacagcatccaggcactcaaagcaacg
aacaataaccttgaacgagcactcgactggatcttcacacatccggaggaggaggagagt
gacgctctctcagaaatggccgacacggagccaaatgacaacgctttctccaacgccaac
tcacacagcgaccccacgctgtctccagacagagacgcgtcgggtccgcgggtcaaagac
gggccgggacgttatgagctctttgctttcatcagtcacatgggagcatccacaatgtct
ggacattatgtttgtcacatcaaaaaggagggaaggtgggtgatctacaacgaccacaaa
gtgtgtttgtcagaaaggcctccaaaagacttgggctacatctacttttaccatcgactg
tccagcagttaa
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