Anoplopoma fimbria (sablefish): 129104208
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Entry
129104208 CDS
T09102
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129104208 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129104208 (xrcc5)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
129104208 (xrcc5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
129104208
NCBI-ProteinID:
XP_054470751
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Position
16:complement(14842598..14850943)
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AA seq
792 aa
AA seq
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MAGSKSALVLCLDVGFSMSNSAPGEEPPFELAKKVIQKFVQRQVFAETKDELALVLFGTD
STDNSLEQDGQYQNITVHRHLMMPDFELLEEIENQIQPESQQADWLDALVVCMDLLQKET
QGKRCDRLNIVLLTDLNTQASSEQIDVIIKNLKKDGITLQFFLPFPVEEDEESGGDADRG
GPGHPGTGKGPTREQQSGLDMVKHIMLNLDEEDGLTEIYSFKNAIEQLCMFKRIERRPMA
WPCQLTIGSCLPIRIVGYKAVTEEKLKKTWTTVDAQSNQKDDVKRETVYCLDDDNETEVQ
KDDTIQGFRYGSDIVPFSKVDQDQMKYKHDGKCFAVLGFTKQNTVHRHQFMGTQVVKVFP
AKDDEHAGVAFSALIRALDEQNMVAIVRYAYDRRSNPQVGAAFPCIKNDYECLIYVQLPF
MEDTRQFTFPSLENNKKFTPSETQLSAVDSLIDSMMLLEEDDNGDQKDMFKVNHIPNPAF
QRHFQCLHHRGVSPGTPLPPMEPWLKAALERPDVITERCQGPLAELKRKFPLTEVEKKKK
LKTSAQIFGKDSEEPDAKNAKGEEEEEDYNLADIAEGSVISVGSVHPDRDFRTLIKKKGL
PFGEGEIQFFLSQFFFSWHAVLMHSFSVCIINHHDSCSALVNCVSLCLVVVTPVSFPVCQ
QLTRRIEQLLSNKNTQYYMKSITCIQAFREQSVKLGDANLYNGYLQSLKRSIPNRGLEVF
WDLLVQDAITLISKDEVEGSTVSKNDANQFLVTEEKKEEEAAPPAEDTGDVDDLASVISF
SLTFSGFKYLLC
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcaggttccaaatcagcattggtgttgtgtctggatgttgggttctccatgtccaac
tctgcccctggtgaagagcctccttttgaacttgccaaaaaagtaatccagaagtttgtc
cagcgccaggtttttgcagagaccaaggatgaactggccttagtcctgtttggcacagac
tccaccgataactcgctggagcaggacggccagtaccagaacatcactgtgcatcgtcac
cttatgatgcctgattttgagcttcttgaggaaatagagaatcagatccaaccagagagt
cagcaggctgattggctggatgctcttgttgtgtgcatggatctcctccagaaagaaaca
caggggaagaggtgtgatcgtctcaacattgtcctcctgactgacctcaacactcaggcc
agctcagagcagatagacgttatcattaaaaacctgaaaaaagatggcatcaccctgcag
ttttttttgcctttccctgtggaggaggatgaagagagtggaggagatgcggacagagga
ggccctggtcacccgggcacgggcaaaggtccgaccagggaacagcagagtggcctcgac
atggtgaaacacatcatgctaaacctcgatgaggaggacggactcactgaaatttactcc
ttcaagaatgcaattgagcagctgtgtatgttcaagcgtatcgagaggagacccatggcc
tggccctgtcagctgaccatcggcagctgtctgcccatccgtattgttggatacaaagca
gtgacagaagagaaacttaagaaaacgtggactacagttgacgctcaaagcaaccagaaa
gacgacgtgaagagagagactgtctattgtctggatgacgacaatgagacagaggtgcag
aaggatgataccatccaaggtttccgttatggaagtgatattgttcccttctccaaagta
gatcaagaccagatgaaatacaagcacgatgggaagtgctttgctgtacttggctttacc
aaacagaacacggtacatcgccatcagttcatggggactcaagtcgtcaaggtgtttcct
gccaaggatgatgagcatgcaggagtcgcgttctccgcgctcatccgagcattggatgaa
caaaacatggtggccattgtacgttacgcctatgaccggcgcagcaaccctcaagtagga
gcagccttcccctgcatcaagaatgactatgagtgtctgatctacgtccagctgcccttc
atggaagacaccaggcagtttacatttccctctcttgaaaacaacaaaaagttcactccg
tcagaaactcagctgtctgctgtggactctctcattgactccatgatgttgttagaagag
gatgataatggagaccaaaaggacatgtttaaggtcaaccacattcccaaccctgccttc
cagaggcacttccagtgtctgcatcatcgaggagtgagtcccggcacccctcttcccccc
atggagccgtggctgaaggctgctctcgaacggccggatgtcattactgaacgttgccag
ggtccactcgcggagctgaagaggaagtttcctctcacagaagtggagaagaaaaagaag
cttaagacgagtgcacagatttttggcaaagactctgaggagccagatgccaagaacgca
aaaggagaggaagaggaggaggactataacctggcggacattgccgaaggctctgttatc
tcggtgggaagcgtgcatccagacagagacttccgtaccctgatcaagaagaagggtctt
ccattcggagaaggtgagatccagttttttctgtcccaattttttttttcctggcatgca
gtcctgatgcacagtttttccgtttgtattataaaccatcatgactcatgttcagccctt
gtaaattgtgtttctctttgtttggttgtggtgacccctgtgtccttcccagtctgtcag
caactgactcgcaggatagagcagttgcttagcaacaagaacacacagtactacatgaaa
agcatcacctgtatccaggctttcagagagcagtctgttaagctgggggatgccaatctg
tacaacggctacctccagtccctgaaaagaagcatcccaaacagagggctggaggtcttc
tgggacctgcttgttcaagatgccataactctgatcagcaaggacgaggttgaaggaagc
accgtatccaaaaacgatgctaatcagtttctggttactgaggagaagaaagaggaggaa
gctgcaccaccagctgaagatactggagatgttgatgacttggcaagtgttatttctttt
agtctgaccttttcaggttttaaatatttattgtgttaa
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