Anoplopoma fimbria (sablefish): 129108118
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Entry
129108118 CDS
T09102
Symbol
lrrc4.2
Name
(RefSeq) leucine-rich repeat-containing protein 4.2
KO
K16351
netrin-G2 ligand
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129108118 (lrrc4.2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129108118 (lrrc4.2)
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
NGL family
129108118 (lrrc4.2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_14
LRR_9
V-set
ig
VEGFR1-3_N_Ig-like
Ig_2
LRRNT
DUF5447
Sp38
Motif
Other DBs
NCBI-GeneID:
129108118
NCBI-ProteinID:
XP_054475757
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Position
19
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AA seq
665 aa
AA seq
DB search
MSPLGQVSVQPTWNAALLAVLSLMVPALSMCQSTGPALGSANPQNCPGVCSCTNQLSKVV
CTRRSLVRVPPNIPANTRYLNLMENSIETIQADTFRHLHHLEVLQLGRNAIRQIEVGAFN
GLTSLNTLELFDNRLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE
LRKLEYISDGAFEGLQNLKYLNLGMCNLREFPNLSPLLGLEELEISENVFPELKPGAFRG
LKNLRKLWIMNSAITTIERNAFDDITALVELNLAHNNLSSLPHNLFTPLQYLVELHLHHN
PWRCDCDVVWLSWWLREYIPTNSTCCGRCHTPIHMRGRYLVEVDQTTFQCSAPFILDAPR
DLNISAARVAELKCRTAAMSSVRWLLPNGTVLSHGSAHPRISVLNDGTLNFSNVLPSDTG
VYTCMVSNMAGNSNASAYLNVSNAELNTSNLSYFTTVTVEVLEPTVEETPKPKPTIPASP
SVFQPVFISTPTVLFQNTQTPRQVSIPTARIPSAPAASLDEVMKTTKIIIGCFVAVTLLA
AAMLIAFYKLRKRHQQRSTVAAVRTMEIIQLEEEVPPVPPPTSGSSGSGDTVLVLPTLVE
HNSNTFKPGYVSTSSSRQGGYGAHWTQNNSLHRSVRQHHSHISTIADPYVIKTTHGKEKV
QETQI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctctgggccaggttagtgtgcagcctacctggaacgcagccctgctcgccgtg
ctctcccttatggtgcctgctctcagtatgtgccagtccacaggccctgcgttgggctcg
gctaacccacagaactgcccaggtgtgtgctcctgcactaaccagctcagcaaggtagtg
tgtacccgccgaagcctggttagggttcccccgaacatcccagccaataccaggtacctg
aacctgatggaaaacagcatagagacgatacaagcagataccttcaggcacctgcatcac
ctggaggtactgcagttgggcagaaatgctatcaggcagattgaggtgggggccttcaat
ggcctcaccagcctcaataccctggagctgtttgacaacagactgacagttatacccagt
ggagcttttgagtacctgtcaaagttgagagagttgtggctaagaaacaatcccattgag
agcatcccctcttatgccttcaaccgtgtcccctccctcatgagactggacttgggagaa
ctgaggaagttggagtacatttctgatggggcatttgaggggcttcaaaacctcaagtat
ctcaacttggggatgtgcaacctgagggagtttcctaatctttcaccactgttgggactg
gaggagctagaaatatcagagaatgttttccctgaactgaagcctggggcctttcgtggg
cttaaaaatctacgtaaactgtggattatgaactctgccatcactaccatcgagaggaat
gcattcgatgacatcacagccttggtggagctgaatttagcccataataacctgtcatcc
ctcccccataacctcttcacccctcttcagtacctggtggagctacacctgcaccacaac
ccttggcgatgtgactgtgatgtagtgtggctctcctggtggctcagagaatacattccc
acaaattccacctgctgcggacgctgccacaccccaatccacatgaggggacgatacttg
gtggaagttgatcagaccacctttcaatgttcagcaccattcatacttgatgctcctaga
gatctgaacatctctgcagcgcgggtggcagaactaaagtgtcgcacagctgcgatgagc
tcagtccgatggcttctccccaatggcactgtattgagccatggctcggctcacccacgg
atatctgtccttaacgacgggacactcaacttctccaacgttctcccgtcagacacagga
gtctacacctgcatggtcagcaacatggcgggaaattccaacgcatcggcctacctaaac
gtcagcaatgctgaactcaacacgtctaatctgtcctattttaccactgtgacagtggaa
gttttagagcccacagtggaggagacccctaaacccaagcctactatccctgcctcgccc
tctgtctttcagcctgtcttcatctccacacccactgtgctgttccaaaacactcagact
ccaaggcaggtgtcaatcccaactgccagaatccctagtgcgccagccgccagcctggat
gaggtgatgaaaaccacaaaaatcatcattggctgttttgttgctgttaccttgctggca
gcggccatgttgatagcattctataaattgcgtaagcggcatcaacagaggagcacagtg
gcagcagtcaggaccatggaaatcatacagttggaggaagaagttcctcccgttccacca
cccacctctggatctagtggctctggtgacacagtgttggtactgcctacattagtggaa
cacaacagcaacacctttaagcctgggtacgtgtccacctcctcatcccgccaagggggc
tatggagcccactggacccagaacaactctcttcatcgctcagtcagacagcaccacagc
cacatcagcaccattgctgatccctacgtcattaagactactcacggcaaggagaaggtt
caagagacccaaatctga
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