KEGG   Anoplopoma fimbria (sablefish): 129111726
Entry
129111726         CDS       T09102                                 
Symbol
lig4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    129111726 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afb03400]
    129111726 (lig4)
Enzymes [BR:afb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     129111726 (lig4)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     129111726 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV BRCT BRCT_2 DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme ATG17_like
Other DBs
NCBI-GeneID: 129111726
NCBI-ProteinID: XP_054479774
LinkDB
Position
22:complement(2450182..2455402)
AA seq 910 aa
MAGTSNSGAAGQPFVADQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHCALHK
DNPKTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCDDKGNLSIKEVNDFLDSVAINNAGNQKDLVKKSLLHVI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDATELYNVNTDLNKVCQQLHSHSVSL
SEVSIGLFSAFKPMLAAIANIRNVEKQMGNAPFFIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTNQFGGSPLQGSLTPYIHNVFKGHVVNCILDGEMMAYNPTTEAFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGREPLKKRYETLQTVFTPVKGRMHLVPKADGRTMQEVV
NSLNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYELGLKLAKHWNIYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELEQFRGKASGKLASRHLHIDGNEPQKKKRKMAAKPKKVVGIVDHFKPQDLSGVAKET
DMFEDVEFCILNGTQDSPKAELEKGVASCGGVVVQNPGPDTYCVIAGAENVRVKNLVTSD
RHDVVWASWLLECLRQKQVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFADTDEQQLRE
VFGRMSGADEPAAADVGQVEQRYGWEDLPTSMFRPFQVYVDRYADIGEPETTIAASCLDI
RALEFRFHGGTVAQKLEEGVSHVVITEESRLLGLRSLRRSFKKKFKIVRDSWVTDSIEAG
YLMNDDDYLV
NT seq 2733 nt   +upstreamnt  +downstreamnt
atggcgggaacttccaacagcggtgctgcaggtcagccctttgttgctgatcaggttcct
ttccttcacctttgtaccactttagagaaaatccagaagtccaaactccgcccagataaa
tccaagatccttggggatttcattgagtcctggaggaagtttcactgtgccctccacaaa
gacaaccccaaaacaaccgactctttctactcagccatgcgcctcatagtcccttccttt
gaacgggagcgaatggcgtacggcatcaaagagagcatgttagctaaactctacatcgac
gtgctgggcctcccgaagaatggccccgaagccaataaactgttgaactaccgcgctccg
accacatcccagggagaagctggtgactttgccggtatggcgtactttgtgctgaagaaa
cgatgcgacgacaaaggaaacctcagcataaaagaagtcaacgacttcctggactcggtg
gccatcaacaacgcgggcaaccagaaggacctggtgaaaaagagcctgctgcacgtcatc
acccagagctcggcactcgagcaaaaatggctcatcaggatgatcctgaaggacatgaag
ctcgggatcagcaaagaaactgtcctccaagtcttccacccggatgccaccgagctctac
aacgtcaacacggacttgaacaaggtgtgccagcagctccacagccactccgtgtcttta
agcgaagtctccatcggactcttctccgctttcaagcccatgttggcggctattgcgaac
atccgcaatgtggagaaacagatgggaaacgccccttttttcatccagaccaagctggac
ggggagcgcatacagctgcacaaagacggcgatgtgtacaagtacttcagccgaaacgcg
tttgagtacaccaatcagtttggaggatccccgctgcaaggctccctgacgccttacatc
cacaacgttttcaaaggccacgtcgtgaactgcatcctcgacggtgagatgatggcgtac
aacccgaccacggaggccttcatgcagaaagggagcaaattcgacatcaagaggctcatg
gacgactcggagctgcagacgtgcttctgcgtgttcgacgtgctgctggtcaatgaccag
aagctcggccgggaaccgctgaagaagcgctacgagacccttcagacagttttcacgcca
gtcaagggacggatgcacctggtgccaaaggccgatggcaggaccatgcaggaggtggtg
aactccctgaatgacgccattgacggcagggaggaggggatcatggtgaaggatccaatg
tccatctacaaacctgacaagcggggggagggatggctaaaaataaagcctgaatacgtg
gacggcttgatggatgagctcgacctgctgattgtcggcggctactgggggaaagggaga
cggggcggtatgatgtcacatttcttatgcgccgtcgccgaagctccaaagcccggcgag
aaaccctcagttttccacaccctctgccgcatcggctccggctacaccatgaaggagttg
tatgaacttggtctaaagctggccaagcactggaacatctatcggaagaatgacccgccg
gcgtccatcctgtgtggaaccgagaaaccggaggtctacatcgagccctgcaactcggtc
atcatccaggtcagggcggccgagatagtcggcagcgacatgtacaaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgacc
ctggcagagctggagcagttccgcggcaaggcgtccgggaagctcgcctcgcggcacctt
cacatcgacggcaacgaaccgcagaagaagaagcgcaagatggcggccaagcccaagaag
gtggtcgggatcgtagaccacttcaagccccaagacctctccggggtcgccaaggagacg
gatatgttcgaggatgtggagttctgtatcctgaatggcacacaggatagccccaaggct
gagctggaaaagggcgtggccagttgtggaggtgttgtggttcaaaaccccggaccggac
acctactgcgtgattgccggcgcggagaacgtgcgcgtgaagaacctggtcacgtcggac
cggcacgacgtggtgtgggcctcctggctgctggagtgcctgcgccagaagcaggtggtc
ccatggcaacctcgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctacttcgcggacacggacgagcagcagctgagggag
gtgttcgggcggatgagcggcgcggacgagcctgcggcggcggacgtcggccaggtggag
cagcggtacggctgggaggaccttcccaccagcatgttcagacccttccaggtctacgtg
gaccgctacgctgacataggggagcctgaaaccaccatagctgccagctgtttggacatc
agggctctggagtttcgcttccatggaggaacggtggctcagaagttagaggaaggagtc
tctcatgtcgttatcacagaggagagcagacttctgggcttaaggtctctgagacgctcc
ttcaagaagaaatttaagattgtacgagactcatgggtgacggattcaatcgaagcaggg
tatctgatgaatgacgatgactacttagtttaa

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