Anoplopoma fimbria (sablefish): 129111726
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Entry
129111726 CDS
T09102
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129111726 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129111726 (lig4)
Enzymes [BR:
afb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129111726 (lig4)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129111726 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
129111726
NCBI-ProteinID:
XP_054479774
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All DBs
Position
22:complement(2450182..2455402)
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AA seq
910 aa
AA seq
DB search
MAGTSNSGAAGQPFVADQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHCALHK
DNPKTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCDDKGNLSIKEVNDFLDSVAINNAGNQKDLVKKSLLHVI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDATELYNVNTDLNKVCQQLHSHSVSL
SEVSIGLFSAFKPMLAAIANIRNVEKQMGNAPFFIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTNQFGGSPLQGSLTPYIHNVFKGHVVNCILDGEMMAYNPTTEAFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGREPLKKRYETLQTVFTPVKGRMHLVPKADGRTMQEVV
NSLNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYELGLKLAKHWNIYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELEQFRGKASGKLASRHLHIDGNEPQKKKRKMAAKPKKVVGIVDHFKPQDLSGVAKET
DMFEDVEFCILNGTQDSPKAELEKGVASCGGVVVQNPGPDTYCVIAGAENVRVKNLVTSD
RHDVVWASWLLECLRQKQVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFADTDEQQLRE
VFGRMSGADEPAAADVGQVEQRYGWEDLPTSMFRPFQVYVDRYADIGEPETTIAASCLDI
RALEFRFHGGTVAQKLEEGVSHVVITEESRLLGLRSLRRSFKKKFKIVRDSWVTDSIEAG
YLMNDDDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaacttccaacagcggtgctgcaggtcagccctttgttgctgatcaggttcct
ttccttcacctttgtaccactttagagaaaatccagaagtccaaactccgcccagataaa
tccaagatccttggggatttcattgagtcctggaggaagtttcactgtgccctccacaaa
gacaaccccaaaacaaccgactctttctactcagccatgcgcctcatagtcccttccttt
gaacgggagcgaatggcgtacggcatcaaagagagcatgttagctaaactctacatcgac
gtgctgggcctcccgaagaatggccccgaagccaataaactgttgaactaccgcgctccg
accacatcccagggagaagctggtgactttgccggtatggcgtactttgtgctgaagaaa
cgatgcgacgacaaaggaaacctcagcataaaagaagtcaacgacttcctggactcggtg
gccatcaacaacgcgggcaaccagaaggacctggtgaaaaagagcctgctgcacgtcatc
acccagagctcggcactcgagcaaaaatggctcatcaggatgatcctgaaggacatgaag
ctcgggatcagcaaagaaactgtcctccaagtcttccacccggatgccaccgagctctac
aacgtcaacacggacttgaacaaggtgtgccagcagctccacagccactccgtgtcttta
agcgaagtctccatcggactcttctccgctttcaagcccatgttggcggctattgcgaac
atccgcaatgtggagaaacagatgggaaacgccccttttttcatccagaccaagctggac
ggggagcgcatacagctgcacaaagacggcgatgtgtacaagtacttcagccgaaacgcg
tttgagtacaccaatcagtttggaggatccccgctgcaaggctccctgacgccttacatc
cacaacgttttcaaaggccacgtcgtgaactgcatcctcgacggtgagatgatggcgtac
aacccgaccacggaggccttcatgcagaaagggagcaaattcgacatcaagaggctcatg
gacgactcggagctgcagacgtgcttctgcgtgttcgacgtgctgctggtcaatgaccag
aagctcggccgggaaccgctgaagaagcgctacgagacccttcagacagttttcacgcca
gtcaagggacggatgcacctggtgccaaaggccgatggcaggaccatgcaggaggtggtg
aactccctgaatgacgccattgacggcagggaggaggggatcatggtgaaggatccaatg
tccatctacaaacctgacaagcggggggagggatggctaaaaataaagcctgaatacgtg
gacggcttgatggatgagctcgacctgctgattgtcggcggctactgggggaaagggaga
cggggcggtatgatgtcacatttcttatgcgccgtcgccgaagctccaaagcccggcgag
aaaccctcagttttccacaccctctgccgcatcggctccggctacaccatgaaggagttg
tatgaacttggtctaaagctggccaagcactggaacatctatcggaagaatgacccgccg
gcgtccatcctgtgtggaaccgagaaaccggaggtctacatcgagccctgcaactcggtc
atcatccaggtcagggcggccgagatagtcggcagcgacatgtacaaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgacc
ctggcagagctggagcagttccgcggcaaggcgtccgggaagctcgcctcgcggcacctt
cacatcgacggcaacgaaccgcagaagaagaagcgcaagatggcggccaagcccaagaag
gtggtcgggatcgtagaccacttcaagccccaagacctctccggggtcgccaaggagacg
gatatgttcgaggatgtggagttctgtatcctgaatggcacacaggatagccccaaggct
gagctggaaaagggcgtggccagttgtggaggtgttgtggttcaaaaccccggaccggac
acctactgcgtgattgccggcgcggagaacgtgcgcgtgaagaacctggtcacgtcggac
cggcacgacgtggtgtgggcctcctggctgctggagtgcctgcgccagaagcaggtggtc
ccatggcaacctcgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctacttcgcggacacggacgagcagcagctgagggag
gtgttcgggcggatgagcggcgcggacgagcctgcggcggcggacgtcggccaggtggag
cagcggtacggctgggaggaccttcccaccagcatgttcagacccttccaggtctacgtg
gaccgctacgctgacataggggagcctgaaaccaccatagctgccagctgtttggacatc
agggctctggagtttcgcttccatggaggaacggtggctcagaagttagaggaaggagtc
tctcatgtcgttatcacagaggagagcagacttctgggcttaaggtctctgagacgctcc
ttcaagaagaaatttaagattgtacgagactcatgggtgacggattcaatcgaagcaggg
tatctgatgaatgacgatgactacttagtttaa
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