Anoplopoma fimbria (sablefish): 129113509
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Entry
129113509 CDS
T09102
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129113509 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129113509 (pcf11)
03019 Messenger RNA biogenesis [BR:
afb03019
]
129113509 (pcf11)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129113509 (pcf11)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129113509 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
SHOCT
Motif
Other DBs
NCBI-GeneID:
129113509
NCBI-ProteinID:
XP_054481817
LinkDB
All DBs
Position
24:1313458..1328734
Genome browser
AA seq
1618 aa
AA seq
DB search
MDCLLLGNGGGVGRSGVGFGSKMADKAAREDACREYQSSLEDLTFNSKPHINMLTILAEE
NLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEK
VDESTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPKFLK
QSEEAPSPQPSPTQPTPPPAPTPPPPAAPPVPVPVPVAAATASQTSLTQEQLIRQQLLAK
QKQLLELQQKKIELELEQTKAQLTGVFVIPTSTSASSPSAQSAATKTVAPTAPVVRPWIP
PPAQTEAKPPTRDPRLNRLGPPASSQAKEQPAGKKDGLATTGSPVLTPEKSSRPDKVKTP
RKEALEEKAKSKSPSPMAKVVQSKNKVEAEIQKSADGTKKDPRLKKRPQDKTGEAKDEEL
KEKKRCPDKKEREEAPRGVDPPRSNKGKLANGSVGKHERAESTEKLEFKTGGNARTHARK
RTRSRSRSRSPSAVAGASPKRKDRPKSRARSSSLSPSPSHKPGKPRRVRADEPDHVKPGR
GDRPAPKKNQSESRRSKRPAEDRHSESRDAHSPRSHDGGGKEAKEAPHRWRSGWDENKHP
KLPEEPHVKPGPPRHKPYGTPTRPAXPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASK
RLESGEISQDEFLDMAHQIKHFFQYQEEKQQRSDSWDDDATAADFPAKKLQLLSSPPSAA
PRGMDAAELSYYEHKSKLRKTQVNRRAAGEEWDGEESPEEGEGVGPGVKTGAVRSAAHTP
SHKSSRAPRERQGERRSKELEEPRLIEEYNHGKEFPTLKSLPGLRFRRRADPREPSEREW
NSPLTERPRXDEREEQKSGYDAPRGYGPPADSRIPDPRRPEGPPAAGTVVHRNCPSPVGL
GPAAPRFERERLSPLKDAAEMSPIPRFESPNSEHSDDGPLNLDAPAPHAPPXSILKAPVR
VGPLTSVRQHSDXPGHTPPHDGGHPPPRYDGPGHMGPARPHPPGWYEGGGPGRYDDPSRF
EGPHHQGPGRFDGGGPPHHNMPERFDGPHMSHGPMRGGEGLGRYDGPPHPQGPGRFDGPI
GQQPPXRFEGPGPGPGHFEGPMQRFDAPRCFDNNMAPGSGPMGFQQQRPMRFDGPMRFEG
HGPMRFDGPVQPGPRFDVPHQGGPPLYEGPLRFNPQHNLQPPMRQMAPPIYDNAIAPQQS
FNMNPQRFPEPMNSQFPAGPMAFSAQSAGNFNMQPAPPFSQPGPAPFYNPAAPAVGMQQT
VNMLGNLNQPFLPQNPVPFGQQTPQVAPPENHFGQVDVNDLLTKLISNGIIKPSQPDAAP
TSSAEPTSTPPVAAPAAAVVVEEEEEEVEEEEDDDLPDLTSFTVDDMKQRFESVVTKLYS
GNQCCLCSMRFTAAQTDLYADHLDWHFRQNHAGKVASKKITHRRWYYGLRDWVEFEEIAD
LEERAKSIFFEKESEEEVQKSQQAAKEKEFQSVKATKDQVGESCEICQEPFETYWVEEEE
DWFLKDALKVDEKNFHPACFEDYKNTSSYLDVTPSPKKVLADHPLSAFIKREEEEEEEEG
TSCAVVAAAVAAAANAAAAANAVAASVKQEVESEASEPAAVKTEEEEVLTDECDQNKA
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgctgggcaacggcggcggtgtcggtaggagcggagtaggtttcgga
tccaagatggcggacaaggcggcgagggaggacgcgtgtcgggagtaccagtcctccctg
gaagacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggccgaggaa
aacctcaacttcgccaaggatatcgtcgctattattgaagcgcaaatcagcaaggcccca
tctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgttggagga
gagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtctttgaaaag
gtggacgaaagcactagaaagagtttgttcaagttgcgatcgacgtgggacgacgtgttt
cctctgaagaagctgtacgcgttggacgtgcgggtcaactccgtggacccggcgtggccc
atcaagccgctgccgcccaccgtcaacgccagcattcacgtcaaccccaagtttttaaaa
cagtctgaggaggctccctctccacagccttctcccactcagccgacaccaccgccggcg
ccaacgccaccaccacccgcggccccgccggtcccggtccccgtccctgtcgcggccgcc
actgccagccagaccagcctgacccaggagcagctgatccgacagcagctgctggccaaa
cagaaacagcttctggagcttcagcagaagaagatcgagctggagctggagcagaccaaa
gcacagctaaccggcgtgtttgtgatcccgacatcgacttcggcctcgtctccgtcagcg
cagagcgcagcgacaaagaccgtcgccccaactgctcccgtggtccgaccgtggatccct
cctccggctcagacggaagccaagcccccgaccagagaccctcgtctgaaccgccttggc
cccccagcttcctcccaggccaaagaacagcctgctgggaagaaagatggcctcgccaca
acaggaagtccggtcctcacgcccgagaaatccagccggccggacaaagtcaaaaccccg
cggaaagaagcgttggaggagaaggccaagtccaaatctccgtctccgatggccaaagtg
gtccagagtaaaaacaaggtggaggctgagatccagaagtcagctgacggcaccaagaaa
gacccgcggctgaagaaacgtccacaggacaaaaccggcgaggccaaagacgaggagctg
aaggagaagaaacgatgccccgacaagaaggagcgcgaggaggctcctcgaggagtcgac
cccccgaggtccaacaaggggaagctggcgaacggctcggtgggaaaacacgagcgcgcc
gagtccacggagaagctcgagttcaagaccggaggcaacgcccgcacacacgccaggaaa
cgcacccgctcgcggtccaggtcccgctcgccctccgccgtcgccggcgcctccccgaag
aggaaggaccggcccaagagcagagccaggagcagctccttgtccccgtcgccgtctcac
aaacccggcaaacccaggagggtccgcgcagacgaaccggatcacgtcaagcccggccga
ggggaccgacccgcacccaagaagaaccaatcagagagcaggaggtcaaagaggccggcg
gaggaccggcactccgagtccagagacgctcactccccacggagccacgacggaggaggc
aaggaggccaaggaggctcctcaccgctggaggagcggttgggacgagaacaaacacccg
aagctgccggaggaacctcacgtgaagccgggacctccgagacacaaaccgtacggcacc
ccgacccgccccgccnacccccggacccccaagcatcgcctcagcgtggacgcaaacctg
cagatacctgaagtcctaaactccgcctccaagaaggacctgctgcggagggccagtaag
cgtctggagagcggggagatttcccaggatgagttcctggacatggcccaccagatcaaa
cacttcttccagtaccaggaggagaagcagcagcgctccgacagctgggacgacgacgcc
accgccgccgacttccccgccaagaagcttcagctgctgagctcgccgccctccgctgcg
ccgcggggcatggacgcggcggagctgtcgtactacgagcacaagtccaaactgaggaag
acgcaggtcaaccgccgagctgccggggaggagtgggacggcgaggagagtccggaggag
ggcgagggggtcgggccgggcgtgaagacgggcgccgtccgcagtgccgcacacacgccg
tcacataaaagcagccgggcgccgagggagcggcaaggtgagaggaggagcaaagagctg
gaggagcctcggctgatcgaggaatacaaccacggcaaagagttccccaccttgaaatct
ctaccggggcttcgcttcaggaggagagccgaccccagagagcccagtgagcgggagtgg
aactcgccgctgacggagcggccgcgcntcgacgaacgcgaggagcagaagagcggctac
gacgccccgcggggttacggcccgcctgccgactccagaatccccgacccgcggaggcct
gaggggcccccagccgccggcaccgtggtccacaggaactgtccgagcccggtgggtctg
gggccggcggcccccaggttcgagcgcgagcgcctttcgcccctgaaggacgcggcggag
atgagcccaatccctcgcttcgagagccccaacagcgagcactccgacgacgggcccctg
aacctggacgcccccgctcctcacgctcccccanaatccatcctgaaggcgcccgtccgc
gtgggaccgctgacctcggtccggcagcacagcgacntcccgggacacacgcctccccat
gacggaggacacccgccgccccggtacgacgggccgggacacatgggccccgccagaccg
caccctccggggtggtacgaaggcggcggccccggtcgctacgacgacccgtcccggttt
gaagggcctcaccaccagggtcccggcaggttcgacggcggcggtccgcctcaccacaac
atgccagagaggttcgacggaccccacatgtctcacggtccaatgagaggcggggagggt
ttggggcgctacgacggtccgcctcaccctcagggccccgggaggtttgatggtcctatc
ggtcagcagcccccgntgaggttcgaggggccgggacccgggccgggtcacttcgagggc
cccatgcagcgttttgacgcaccacggtgcttcgacaacaacatggctcctggctctgga
ccaatgggcttccagcagcagcggcccatgcgcttcgacggcccgatgaggtttgaggga
cacggtccgatgcgcttcgacggccccgttcagccgggacccaggtttgacgtgccccat
cagggcggtcccccgctctacgagggccccctgaggttcaacccccagcacaacctgcag
ccccccatgagacagatggctccgcccatctacgacaacgccatcgccccgcagcagagc
ttcaacatgaacccccagcgcttcccggagcccatgaactctcagttccccgccgggccg
atggcgttctcggctcagtcggccggaaacttcaacatgcagccggctccgcccttcagc
cagccaggccccgcccccttctacaaccctgccgcccccgccgttggcatgcagcagacg
gtgaacatgttggggaacctcaaccagcccttcctgcctcagaacccagtgcctttcggt
cagcagactccacaggttgctcctccagagaaccacttcggtcaggtcgacgtcaacgac
ctgctgaccaaactcatctccaacggcatcatcaaaccgtcgcagcccgacgccgcgccg
accagcagcgccgaacctacgtccacgcctccggtagctgcgcccgcggcggcggtggtg
gtggaggaggaggaagaggaggtggaggaggaggaggatgacgacctcccagacctcacc
agcttcaccgtcgacgacatgaagcagcgcttcgagagcgtggtgaccaagctgtactcg
gggaaccagtgctgcctgtgcagcatgaggttcaccgccgcgcagaccgacctgtacgcc
gaccacctggactggcacttcaggcagaaccacgccggcaaggtggccagcaagaagatc
acgcaccgccgctggtactacggcctccgggactgggtcgagttcgaggagatcgccgac
ctggaggagcgagcaaagagtattttctttgagaaggagagcgaggaggaggtccagaag
agccagcaggccgccaaggagaaggagttccagagcgtgaaggccaccaaggaccaagtg
ggagagtcgtgtgaaatctgtcaggagccgtttgagacgtactgggtggaggaggaggag
gactggttcctgaaggacgcactcaaggtcgacgaaaagaacttccatcccgcctgtttt
gaagattataaaaatacgtcgtcctacctcgacgtcacgccgtcgcccaaaaaggtgctc
gctgatcacccgctgagcgccttcataaagagggaagaggaggaggaggaggaggagggc
acttcctgtgctgttgtagccgccgccgtcgctgctgctgctaacgccgccgccgctgct
aacgccgtcgccgcctcagtgaaacaggaagtagagtctgaggcgagcgagccagctgct
gtgaagacggaggaggaggaggttttaacggacgagtgtgatcagaacaaagcgtaa
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