Anoplopoma fimbria (sablefish): 129113586
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Entry
129113586 CDS
T09102
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129113586 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129113586 (ddx46)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129113586 (ddx46)
Spliceosome [BR:
afb03041
]
Complex A
U2 snRNP components
U2 related factors
129113586 (ddx46)
Complex B
129113586 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF2730
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
129113586
NCBI-ProteinID:
XP_054481948
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All DBs
Position
24:4529037..4542438
Genome browser
AA seq
1064 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDERDRNRRERTRSRERRRSRSRDRKRV
RRSRSRERRRSRSRERRRSGSRSRARRSRSGSASKSRRPDEKSRSKEKDNVDPLSEKKKI
KEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKRELEEMKQGKK
WSLEDDEDDDEDTSAPMEGDDDEEEEGEGKPEIKEKEIKEEDEEEGEKEKETETPMELLP
EEDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGMMVTKVMTVVKTKKGPNTHKKKGELM
ENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEQYRRNFYVEVPELARM
TQEDVNAYRLELEGIVVKGKGCPKPIKTWVQCGVSMKILSAMKRHGYDKPTPIQAQAIPA
IMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKEC
KKFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRSTY
VVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPLEIQVGG
RSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADTLLKDLMKASYP
CMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVH
RAGRTGRAGNKGFAYTFITDDQVRYAGDIIKALELSGSPVPPELEKLWASFKDQQKAEGK
TIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKK
RVKDLSAPGSSSGPAGSSASSSAAPGGLPGVGPPSAGNIQKLEMAKRLALKINVKKNLGA
EAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAE
TVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIY
LAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgaatcgagacactacaggaagcgctcagcgtccaggggccgctcgggaagc
cgctcaaagagccgatccccggacaaacgctccaagaaggacgagcgggaccggaaccgg
agggagaggacccggagccgggagcgacgcaggtcccggtccagagacagaaagagagtc
aggcgctccaggagcagagagaggaggaggtccagaagcagagagaggaggaggtcgggc
agcaggagccgagcacggaggtcccgatctggtagcgccagcaagagcaggaggccagat
gaaaagtcaaggagcaaggagaaagacaacgttgatcctttatccgaaaagaaaaagatt
aaagaggagaaagaggatgagaaggttgaggatcaagactttgaccagaacaagctggag
gaggagatgaggaagaggaaggagcgtgtggagaagtggagggaagagcagaggaagaag
gccatcgagaacatcggagagatcaagagggaactggaggagatgaaacagggcaagaag
tggagcctggaggacgacgaagacgatgacgaggacacttccgctccgatggagggagac
gacgacgaagaagaagaaggggaagggaagcctgagattaaagagaaggagataaaggag
gaggatgaagaggagggtgagaaggagaaggagactgagaccccaatggagctgctgccc
gaggaggacgacgtggacccgctggacgcctacatggaggaggtgaaacaggaggtgaag
aagttcaacatgggagccatgaaaggaaatgataagaaaggaatgatggtaaccaaagtg
atgacagttgttaaaaccaagaaaggacccaacactcacaagaagaagggagagctgatg
gagaacgaccaggacgctatggaatactcatcagaggaggaggaggtggatctgcagacg
gctctgacgggctttcagaccaaacagaggaaggtcctggagcctgttgaccacggcaag
atccagtacgagcagtaccgcagaaacttctatgtggaggtccctgagctcgccaggatg
actcaagaagacgtgaacgcgtacaggctggaactggagggcattgtcgttaaagggaag
ggctgtcccaaacccatcaagacctgggtgcagtgtggagtgtcgatgaagatcctcagc
gcgatgaagaggcacggctacgataagcccaccccgatccaggcccaggccatccctgcc
atcatgtcgggccgagacctcatcggcatcgccaagaccggcagcgggaaaaccatagcc
ttcctgctgcccatgttccgacacatcatggaccagaggcctctggaggagtccgaggga
ccaatctctgtaatcatgactccgaccagagagttggctctgcagatcaccaaggagtgt
aagaagttctccaaacagctgggactcagggtggtgtgtgtttatggaggcacgggcatc
agcgaacagatcgctgagctgaagagaggagctgagatcatcgtgtgcacgccgggaaga
atgattgacatgttgggggccaacagcggtcgagtcaccaacctgcgcagatctacatat
gtggtgttggacgaagcagacaggatgttcgacatgggcttcgagccacaggtgatgcgt
atcgtggacaacgtgcgtccagaccggcagacggtcatgttctcggcgaccttccccaga
gccatggaggcgctggctcgtaggatcctggccaagcccctcgagatccaggtggggggc
cgcagtgtcgtgtgctccgacgtggaacaacacgtgctggtgattgaagaggacaagaag
ttcctgaagctgctggagattctgggccactaccaggagaagggctccgtcatcatcttt
gtggacaaacaggagcatgcggacacactgctgaaggacctgatgaaagcctcgtacccc
tgcatgtcactgcacggaggaattgaccagtacgacagagacagcatcatcaacgacttc
aagaatggagcatgtcgtctgatggtggccacctctgtggcagccagaggcctggacgtc
aagcagctcatcctggtggtcaactacaactgtcccaaccactacgaggactacgtccac
agggccggacgcacgggccgagcaggcaacaagggctttgcatacaccttcataacggac
gatcaggttcgctatgctggggatatcatcaaagctttggagctgtccggctctcctgtc
ccgcctgagctggagaagctttgggcctccttcaaagaccaacagaaagcggagggaaag
accattaagagcagcagcggattctcaggaaaaggcttcaagtttgatgagaccgaacac
gctttggccaacgagaggaagaagttgcagaaagctgctcttggactgcaggactctgac
gacgaggacggagccctggatattgaggagcaaatcgagagcatgttcaactccaagaag
agggtgaaggatctgtctgctcccgggtcgagctccggtcctgcaggatcttctgcctcc
tcatcagccgcacccggggggctgccaggagtcggacccccgtctgctggaaacatccag
aaactggagatggccaagaggctggcgctcaagatcaacgttaagaagaacctgggcgcc
gaggctcaggacgtgatgcagcaggccaccaacgccatcctgcggggcggcaccatcatg
acaccctcagtgtcggcgaagaccatcgcggagcagctggcggagaagatcaacgccaag
ctgaactacacccccgtggagaagctggaggaggagcggcaggcggctgaacaggccgag
accgtcaagagatacgaggaggagctggagatcaacgacttccctcagacggccaggtgg
aaggtgacatccaaagaggctctgcagaggatcggtgaatactctgaagccgccatcacc
atcagaggaacatatttccctccgggcaaagagcccaaagagggagaacgcaagatctac
ctggctattgaaagtgcaaatgaactggctgtgcagaaagccaaaacggagatcacacgg
ttaatcaaggaggagctcatcagattacaaaattcctaccagccgacgagcaaaggccgg
tacaaagtgctgtag
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integrated database retrieval system
