Anoplopoma fimbria (sablefish): 129114083
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Entry
129114083 CDS
T09102
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129114083
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129114083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_6
U-box
DHC_N2
zf-RING_5
zf-RING_10
Mt_ATP-synt_D
DnaGprimase_HBD
DUF3150
Motif
Other DBs
NCBI-GeneID:
129114083
NCBI-ProteinID:
XP_054482576
LinkDB
All DBs
Position
24:complement(4552169..4554439)
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AA seq
555 aa
AA seq
DB search
MAQQGIQLNREKLSCSICLDLLKDPVTIPCGHSYCMSCIKDCWDEENQKKETHSCPQCRQ
SFRPRPALVKNTLLAELVEELKEVGLQAASSDPSYAGPGDVACDLCSGMKLKAFKSCLMC
MASYCEQHLQPHYDVAPLKKHKLVEATLKLQENICSRHDEVMKIFCRTDQQCICYLCSMD
DHKGHDTVSAAAERAERQTELRASRQKIQRRVQDTETNVKVLQQRVGAINLSADEAVRDS
EKMFTELRRLIDKRSSEVKQQIRSQQKTQVKQAEEFVEKLQQEITELRRKDAEMELLSST
EDHLHFLTSYPSLSCLSESTDLPSIDTHPLHSFKHVAAAVSEARDKLQAVLSEESRKISL
AVTEVDVLLPQAEPKTRDDFMKYSCQLTLDPNTAHKRLSLSDGNRKVTLMAVEQLYSDHP
DRFCERWQVLSREGLTGRCYWEVKWSGTVFIAVAYKDISRTGTRDECGFGFNNKSWSLKC
FSGGYEFRHNKIHSSVSGPQSSTIGVYLDHSAGTLSYYSVSKTMTLLHRVQTTFTQPLYP
GLWIVNNTGDNAELC
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcaagggattcagctgaatcgagaaaaactgagctgttcaatctgtctggat
ctcctgaaggatccggtgactatcccctgtgggcacagctactgcatgagctgtattaaa
gactgctgggatgaggagaatcagaagaaggaaacgcacagctgccctcagtgcagacag
agcttcagaccgaggcctgccctggtgaaaaataccttgttagcagagttagtggaggaa
ctgaaggaagtaggactccaagctgcttcatctgatccttcctatgcgggacctggagac
gtggcctgtgatttatgctctgggatgaagctgaaagccttcaagtcctgcctgatgtgt
atggcctcttactgtgagcaacacctccagcctcactacgatgttgctccattaaagaaa
cacaagctggttgaagccactttaaagctccaggagaacatctgctctcgccacgacgag
gtgatgaagattttctgccgcactgatcagcagtgcatctgctatctctgctccatggat
gaccataaaggtcacgacacagtctccgctgccgcagagagggctgagaggcagacggag
ctcagggcgagtcggcaaaagatccaacggagagtccaggacaccgagacaaatgtcaaa
gtgcttcaacagagggtgggggctatcaatctttcggctgatgaagctgtgagggacagt
gagaagatgttcacagagttgaggcgtcttattgataaaagaagctctgaagtgaagcag
cagatcagatcccagcagaaaactcaagtgaagcaagctgaagagtttgtggaaaagctg
cagcaggagatcactgagctgcggaggaaagacgctgagatggagctgctctcaagcaca
gaggatcacctccatttcctgaccagctacccctcgctgtcctgtctgagcgagtctaca
gacttacccagcattgatacccatcctcttcactcatttaagcatgtggcagcggctgtg
tcggaggccagagataaactgcaggctgttctgagtgaggaatccagaaagatctctctg
gcagtgactgaagtcgatgttttactgcctcaagcagagcccaaaaccagagatgacttc
atgaaatattcttgtcaactcacactggatccaaatacggcacataaacgtttgtcattg
agtgacgggaacagaaaagtaacattaatggcagtagaacagttatattcagaccaccca
gacaggttttgtgaaaggtggcaggtcctgagtagagagggtctgactggacgctgttac
tgggaggtgaagtggagcgggacagtttttatagcagttgcatacaaagatattagcaga
acagggaccagggatgaatgtgggtttggatttaataacaaatcttggtcattgaaatgt
ttcagtggtggttatgaattcagacataacaaaattcatagttccgtctcgggccctcag
tcctccacaataggagtttatctggatcacagtgcaggtactctgtcttactacagcgtt
tctaaaaccatgactctcctccacagagtccagaccacgttcactcagcctctctatcct
ggattatggattgtaaataatactggagacaatgctgagttgtgttag
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