Alistipes finegoldii: Alfi_2529
Help
Entry
Alfi_2529 CDS
T02133
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
afd
Alistipes finegoldii
Pathway
afd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Alfi_2529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afd03400
]
Alfi_2529
DNA repair and recombination proteins [BR:
afd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Alfi_2529
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Alfi_2529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_16
DUF87
AAA
AAA_22
AAA_33
AAA_30
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AFL78796
UniProt:
I3YP78
LinkDB
All DBs
Position
complement(2857303..2859378)
Genome browser
AA seq
691 aa
AA seq
DB search
MDFKLVSDYAPMGDQPEAIEQLVGSIRHGSKHNTLLGVTGSGKTFTVANVVAQLNRPTLV
LSHNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINAEIEKL
RLRTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAIDIKVGQIVSYKHFLYKLVEALY
TRTERELEPATFRVNGDTVDIMAAFGEFGSQCFRVMFYDNEIEAIQTIDPVTGQRIHSLD
NLTLYPTSLFVTTKERINGAVQQIYLDLGRQIEFFERAGRPMEAQRIKQRVEYDIEMIKE
LGYCPGIENYSRYFDGRSEGTRPFCLIDYFPKDYLLVVDESHVTIPQVHAMFGGDRARKE
NLVEYGFRLPAAKDNRPVTFAEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLV
DPPLEVRVTMNQIDDLLEEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSD
VDTLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIA
GRAARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHGMLPRRAQRSGSGQSTL
LTTRTDVPEIAAVYPIAEDHYMAAADVQKTYAASENLDALIVKAREDMERAAKSLDFLAA
AKFRDRMYELQKLREETGNGNSRKTAHHETL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaactcgtatcggattacgccccgatgggcgaccagccggaagcgatcgaa
cagctcgtcggctcgatccgccacggctccaaacacaacaccctgctgggcgtcaccggt
tcgggaaagaccttcaccgtggccaacgtcgtcgcgcagctgaaccggccgacgctggtc
ctgagccacaacaagaccctcgcggcgcagctttacggcgaattcaggaacttctttccc
gaaaacgccgtggagtatttcgtctcctactacgattactaccagccggaggcctacctg
ccttcgacggacacctatatcgaaaaagacctttcgatcaatgccgagatcgagaaactg
cgtctgcgcaccgtcgccacgctgttgtcggggcgccgcgacgtgatcgtcgtgtcgagc
gtgtcgtgtctctacggcgcgggcaatcccgcggatttccacgccacggcgatcgacatc
aaggtcggacagatcgtcagctacaagcacttcctctacaagctggtcgaagcgctctac
acccgcaccgagcgggagctggagcctgcgacgttccgcgtgaacggcgacacggtggac
atcatggcggcgttcggagagttcggcagccagtgtttccgcgtgatgttctacgacaac
gagatcgaagccatccagaccatcgaccccgtgacgggacagcgcatccattcgctcgac
aacctgacgctctaccccacgagtctcttcgtaaccacgaaggagcgcatcaacggcgcc
gtacagcagatatacctcgacctcggccggcagatcgaattcttcgagcgggccgggcgg
ccgatggaggcccagcgcatcaaacagcgcgtggaatacgacatcgagatgatcaaggag
ctgggctactgccccggcatcgagaattactcgcgctacttcgacggccgcagcgagggt
acgcgtccgttctgcctgatcgactacttcccgaaagactacctgctggtcgtggacgag
agccacgtgaccatcccgcaggtgcacgccatgttcggcggcgaccgcgcgcgcaaggag
aacctcgtggagtacgggttccggctcccggcggccaaggacaaccgtccggtgaccttc
gccgagttcgaacagctgcagggcacgtcgatctacgtcagcgcgacgcccgcggattac
gagctgatgaagagcgaaggcgtgatcgtcgagcagctgatccgccccacggggctggtc
gatccgccgctcgaagtgcgcgtaacgatgaaccagatcgacgacctgctggaagagatc
gacaagcgggtgaagaacgacgacaaagtgctcgtgacgaccatcaccaagcggatggcc
gaggagctgtccaaatatttcgaccgcgtgggggtgcgcaaccgctacatccactcggac
gtggatacgctggagcgcatacagattctggaggacctgcgggccggcatgttcgacgtg
ctggtgggcgtgaacctgctgcgcgaaggtctggacctgcccgaagtggcattggtggcg
atcctcgacgccgacaaggagggattcctgcgcaacgtgcgttcgctcacgcagatcgcg
ggacgtgcggcgcgtcattcacagggcaacgtgatcctctatgccgacacctgcaccgat
tcgatgcgctacgccatcgagcagagcaaccgccgccgcgagaagcaggtgcgctacaac
atggagcacggcatgctgccgcgccgcgcacagcgaagcggttcgggacagagcacgttg
ctgaccacgcggaccgacgtaccggaaatcgcggcggtctaccccatcgccgaggatcat
tacatggctgcggcggacgtgcagaagacttatgccgcgagcgaaaacctcgatgcgctg
atcgtcaaggcgcgcgaagacatggagcgtgcggccaagtcgctcgacttcctcgccgcg
gcgaaattccgcgaccggatgtacgaactgcaaaaactcagggaagagaccggcaacgga
aattcccgcaaaacagcacaccatgaaacgctgtaa
DBGET
integrated database retrieval system
