Acidithiobacillus ferrooxidans ATCC 53993: Lferr_0539
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Entry
Lferr_0539 CDS
T00758
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lferr_0539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afe03400
]
Lferr_0539
Enzymes [BR:
afe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Lferr_0539
DNA repair and recombination proteins [BR:
afe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Lferr_0539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACH82793
LinkDB
All DBs
Position
complement(495093..498443)
Genome browser
AA seq
1116 aa
AA seq
DB search
MTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPAPLVFPDREILPYDRLAPPADATATR
LATLATLPEWRGVCLAPLSAVLQRLPPRSFLDQHAFVLAVGDHLSPEGFRQRLIDAGYRN
VSEVSEAGELAWRGGIIDLFPSGSPLPYRIELFDRVVESIRAFDPETQRTLQKVEGVSLL
PAREVPVDTAALQEFRSRFRARFSGDPQRAEIYRAASRGQAPQGAEHYLPLFFPECSHLL
MHFPVDGVVFLPPGLEASARHIRQDWQERYEERSHDTVHPILPPDELLLPPSEWEDVLRG
RARVYGQQEGDAERLPTAPLPDLHGSPEAPLASLDTFLRHLPTTGRVILAAESPGRQEAL
SERLGKSGLLPSRVHDWPEFLAGTERIAITVAPLERGLLIKENGLVRLALVSEAQIFGDR
VFAQRRSANARQRSIEGLVRDLGELQPGDAVTHEEYGIGRFQGMATPFASQGDINEYVVL
EYANGDLVYVPADHLDRIARYVGNGATEPVLSRLGSNHWEKVKAKARQKAVDAASELLDI
YARRAARTGRAFPEPDDAYWEFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVG
FGKTEVALRAAFLAAHSGAQVAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKT
HKQVLTAVSVGEVDILIGTHRLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDI
LTLTATPIPRTLNLSLAGLRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRGGQ
VYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTII
ESGIDNPHANTILINRADKFGLAQLHQLRGRVGRSHQRAYAYLFTPDLRAMSDDARRRLD
AIQSLEDLGVGFALASHDLEIRGAGELLGEEQSGHMDEVGFTLFMEWLDDAVEAIRAGRD
PRSLEEQRTSGPEIHLNTPALIPDDYLPDVHLRLQLYKRLSDVRSDTAIGEIMVEMIDRF
GPIPAPARTLLCQTRLRLVAIQTGIEQIDAGPAGARLQFAAENQVAPDKIIRLIQQPHSI
YQLDGEHRLRIRRDLPDGEARCQELLQLIDQLRIQP
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggcagtggcagcgcccgctactgattctgctgccgaacgcccgcgacgtggag
gaatggcagcgcgagtggcgttttttcgcaccggacttgcccgcgccgctggttttcccg
gaccgcgaaatccttccctatgaccgcttggcgccgccggcagatgccacggccacccga
ctggctacccttgccaccttgccggaatggcgtggcgtttgtctcgcccccctgtccgcc
gtcctgcaacgcctgccaccgcgcagtttcctcgaccagcacgcttttgtcctagccgtg
ggcgaccacctgagtccggaaggttttcgccagcgcctgatcgacgccggctaccgcaac
gtcagtgaagtctctgaggccggcgaattggcctggcgtggtggaatcatcgatctcttt
cccagcggtagccccctgccctatcgcatcgagctcttcgatagggtcgtggaaagcatc
cgtgcctttgatccggaaacccagcgtaccctgcaaaaggtcgagggggtctctctgctc
ccggcgcgggaagtgccggtggacaccgccgcgctacaggaatttcgcagccgcttccgc
gcccggttcagcggtgacccgcaacgcgccgagatataccgggcggccagccggggacag
gcgccccaaggcgccgagcattatcttccgctcttctttccggagtgcagccacctgctg
atgcactttcccgtagacggcgtcgtctttctcccgcccggtctggaagcatccgcccgg
cacattcgtcaggactggcaggagcgctatgaggaacggagccacgacacggtgcatccc
atactgccgcctgatgaactgctcctcccccccagtgaatgggaagatgtcctgcgcggt
cgggcgcgggtatatgggcaacaggagggcgatgcggagcgtctgccgaccgctcccctc
cccgatcttcatggcagcccggaagcgccactagcctcactggatacttttcttcgccat
ctgccgaccacgggccgggtcatcctcgccgctgaatcacccggccgtcaggaagccctg
tcggaacggcttggcaagagcggactgctccccagccgggtgcatgactggccggagttc
ctggccggtacggaacggatcgccatcaccgtagcacccctggaacgcggcctgctcatc
aaggaaaatggcctggtcagactggcgctggtctccgaggcgcagatttttggtgatcgc
gtctttgcccagcggcgtagtgccaacgcccgacagcgcagcattgaaggcttggtccgc
gatctcggcgagttacagccgggtgatgccgttacccatgaggaatacggcatcggccgt
tttcagggcatggctacgccctttgcctcccagggagacatcaatgaatatgtggtcctg
gagtacgccaacggcgatctcgtctacgtcccggcggatcatctggatcgtatcgcccgc
tacgtgggtaatggtgcgacggaaccggtgctctcccgcctcggcagcaatcactgggaa
aaagtcaaggccaaggcgcggcaaaaggccgtcgatgccgccagcgaactgctggacatc
tatgctcgtcgcgcggcgcgcaccggtcgggctttccccgaaccggatgacgcctattgg
gaattcgtgtcccgctttccctttgaggaaaccccggatcagcagcaggccattgacgcc
gtcattgccgatatgaccagcccccaccccatggaccgcctggtctgcggcgatgtcggc
ttcggcaaaaccgaggtggcgctccgtgcggcttttctggcggcgcacagtggtgcgcag
gtggccgtactggtccccaccaccctgctcgcccagcagcattacgagaatttccggaac
cgctgcgccgggctgcccctgcgggtggaagtgctctcccgtttccagaatgccaaaacg
cacaagcaagtgctcacggcagtgtccgtaggggaggtggatatcctgatcggcacccac
cgcctgctgcaaaaggatgtcgccttccacgacctggggctgctgattctggatgaggag
catcgcttcggggtacgccagaaggagcggatcaaggccctgcgcgccgaggtggatatc
ctcaccctgaccgcaacgccgatcccccgcactctcaatctctcgctggccggcctgcgt
gacttatccatcatcgccacgccaccccagcgccgccagccggtacgcacctttgtgcaa
atctgggatgatgcgacggtgatcgaagcctgccagcgcgagctgcatcgcggcggtcag
gtatattttctgcataatgaggtacgcgacatcgagcgcatggcggccacactgcgccgc
ctgctgccggaagcgcgcctgcgcgtggcccatggccagatgcccgagggcgaactggaa
gcggtgatgctggatttttaccatcagcgcttcgacatcctcctctgcaccaccatcatc
gagtcggggatcgacaacccccatgccaacaccatcctcatcaaccgcgccgataaattt
ggtctggcccagctccatcagttgcgcggccgggttggtcgttcccatcaacgcgcctac
gcctacctgttcaccccggaccttcgggccatgagcgacgatgcccggcgccgcctcgac
gccatccagtccctggaagatctgggcgtcggctttgccctggccagccacgatctggaa
atccgcggtgctggcgagttgctcggcgaagagcagagcgggcacatggatgaggtgggg
ttcaccctcttcatggaatggctggacgatgccgtggaagccatccgtgccgggcgggat
ccccgcagtctggaagaacaacgcacgagcggtcccgagatccatctcaacacaccggcg
ctcatccccgacgactacctgcccgacgtgcatttgcgcctgcaactatacaagcgcctc
agcgatgtgcgcagtgacaccgccatcggtgagatcatggtggagatgatcgaccgcttc
ggacccattccggcgccggcccgcaccctgctctgtcagacccggttgcgtcttgtcgct
atccagaccggcattgaacagatcgatgccggccccgccggtgcccgcctgcaattcgcc
gccgaaaaccaggtggcccccgacaaaatcatccggctcatccagcaacctcacagcatc
taccaactggatggcgagcaccgcctgcgcatccgccgcgacctgcccgacggcgaagcg
cgctgtcaggaattgctgcaactcatcgaccaactgaggattcaaccatga
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