Acidithiobacillus ferridurans: AFERRID_10380
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Entry
AFERRID_10380 CDS
T05847
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFERRID_10380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afj03400
]
AFERRID_10380
Enzymes [BR:
afj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFERRID_10380
DNA repair and recombination proteins [BR:
afj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFERRID_10380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBF64820
UniProt:
A0A2Z6IGK8
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All DBs
Position
1032847..1036197
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AA seq
1116 aa
AA seq
DB search
MTRQWQRPLLVLLPNARDVEEWQREWRFFAPDLPAPLVFPDRETLPYDRLAPPADATATR
LATLATLPEWRGVCLAPLSAVLQRLPPRSFLDQHAFVLAVGDHLSPEGFRQRLIDAGYRN
VSEVSEAGELAWRGGIIDLFPSGSPLPYRIELFDRVVESIRAFDPETQRTLQKVERVSLL
PAREVPVDAAALQEFRSRFRARFSGDPQRAEIYRAASRGQAPQGAEHYLPLFFTESSHLL
MHFPVDGVVLLPPGLEASARHVRQDWQERYEERRHDTVYPILPPDELLLPPGEWEDALRG
RALVYGQQEGDAERLPTAPLPGLQGSPEAPLASLDTFLRHLPTAGRVILAAESAGRQEAL
SERLGKSGLLPSRVHDWPEFLAGTERIAITVAPLERGLLIKENGLVRLALVSEAQIFGDR
VFAQRRSANARQRSMEGLVRDLGELQPGDAVTHEEYGIGRFQGMATPFAAQGDINEYVVL
EYANGDLVYVPADHLDRIARYVGNGATEPVLSRLGSNHWEKSKAKARQKAIDAASELLDI
YARRAARTGRAFPEPDDAYWEFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVG
FGKTEVALRAAFLAAHSGAQVAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNTKT
HKQVLTAVSVGEVDILIGTHRLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRSEVDI
LTLTATPIPRTLNLSLAGLRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRGGQ
VYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTII
ESGIDNPHANTILINRADKFGLAQLHQLRGRVGRSHQRAYAYLFTPDLRAMSDDARRRLD
AIQSLEDLGVGFALASHDLEIRGAGELLGEEQSGHMDEVGFTLFMEWLDDAVAAIRAGRD
PRSLEEQRASGPEIHLNTPALIPDDYLPDVHLRLQLYKRLSDVRSDTAIGEIMVEMIDRF
GPIPAPTRTLLCQTRLRLVATQTGIEQIDAGPAGARLQFAAENQVAPDKIIRLIQQPHSI
YQLDGEHRLRIRRDLPDGEARCQELLQLIDQLRIQP
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggcagtggcagcgcccgctgctggttctgctgccgaacgcccgcgacgtggag
gaatggcagcgcgagtggcgttttttcgcaccggacttgcccgcgccgctggttttcccg
gaccgcgaaacccttccctatgaccgcctggcgccgccggcagatgccacggccacccgg
ctggccacccttgccactctgccggaatggcgtggcgtgtgtctcgcccctctatccgcc
gtcttgcaacgcctgccaccgcgcagtttcctcgaccagcacgcctttgtcctcgccgtg
ggcgaccatctgagcccggaaggttttcgccagcgcctgatcgacgccggctatcgcaat
gtcagtgaggtttcggaggctggcgaattggcctggcgtggtggaatcatcgatctcttt
cccagtggtagccccctgccctatcgcatcgagctcttcgatagagtcgtggaaagcatc
cgtgccttcgacccggaaacccagcgtaccctgcaaaaggtcgagcgggtctctctgctc
ccggcgcgggaagtgccggtggacgctgccgcgctacaggaatttcgcagccgcttccgc
gcccggttcagcggtgacccgcaacgcgccgagatataccgggcggccagtcgaggacag
gcgccccaaggcgccgagcattatctcccgctcttctttacggagagcagccacctgctg
atgcactttcccgtagacggcgtcgtccttctcccgcccggtctggaggcatccgcccgg
cacgttcgtcaggactggcaggagcgctacgaggaacggcgccacgatacggtgtatccc
atactaccacctgatgaactgctcctaccccccggtgaatgggaagatgccctgcgcggt
cgggcgctggtatatgggcaacaggagggcgatgcggagcgtctgccgaccgcccccctc
cccggcctccagggcagcccggaagcgccgctggcctcactggatacctttctgcgccat
ctgccgaccgcgggccgggtcatcctcgccgctgaatcagcgggccgccaggaagccctg
tcggaacggcttggcaagagcggactgctccccagccgggtgcatgactggccggagttc
ctggcgggtacggaacggatcgccatcaccgtggcgcccctggaacgcggcctgctcatc
aaggaaaatggcctggtcagactggcgctggtctccgaggcgcaaatttttggtgaccgc
gtctttgcccagcggcggagcgccaacgcccgacagcgcagcatggaaggcctggtccgc
gatctcggcgagttacagccgggtgatgccgttacccatgaggaatacggcatcggccgt
tttcagggcatggccacgccctttgccgcccagggagacatcaatgaatatgtggtcctg
gagtatgccaacggcgatctggtctacgtcccggcggaccatctggatcgtatcgcccgc
tacgtgggtaatggtgcgacggaaccggtgctctcccgcctcggcagcaatcactgggaa
aagtccaaggccaaggcgcggcaaaaggccatcgatgccgccagcgaactgctggatatc
tatgcccgccgcgcggcgcgcaccggccgggcttttcccgaaccggatgacgcctattgg
gaattcgtgtcccgctttccctttgaggaaaccccggatcagcaacaagccattgacgca
gtcattgccgatatgaccagcccccaccccatggaccgcctggtctgcggcgatgtcggc
ttcggcaaaaccgaggtggcgctccgtgcggcctttctggccgcgcacagtggtgcgcag
gtggccgtactggtccccaccaccctgctcgcccagcagcattacgagaatttccggaac
cgctgcgccgggctgcccctgcgggtggaagtgctctcccgtttccagaataccaaaacg
cacaagcaagtgctcacggcagtgtccgtaggggaggtggatatcctgatcggcactcat
cgcctgctgcaaaaggatgtcgccttccacgatctggggctgctgattctggatgaggag
catcgcttcggggtgcgccagaaggagcggatcaaggccctgcgctccgaggtggatatc
ctcaccctgaccgcaacgccgatcccccgcactctcaatctctcgctggccggcctgcgt
gacttatccatcatcgccacgccaccccagcgccgccagccggtacgcacctttgtgcaa
atctgggatgatgcgacggtgatcgaagcctgccagcgcgagttgcatcgcggtggtcag
gtatattttctgcataatgaggtacgcgacatcgagcgcatggcggccacactgcgccgc
ctgctaccggaagcgcgcctgcgcgtggcccatggccagatgcccgagggcgagctggaa
gcggtgatgctggatttttaccatcagcgcttcgacatcctcctctgcaccaccatcatc
gagtcgggtatcgacaacccccatgccaacaccatcctcatcaaccgcgccgataaattt
ggtctggcgcagctccatcagttgcgcggccgggttggtcgttcccatcaacgcgcctac
gcctacctgttcacccccgaccttcgggccatgagcgacgatgcccggcgccgcctcgac
gccatccagtccctggaagatctgggcgtcggctttgccctggccagccacgacctggaa
atccgcggtgctggcgagttgctcggcgaagagcagagcgggcacatggatgaggtgggt
ttcaccctcttcatggaatggctggacgatgccgtggcagccatacgtgcggggcgggat
ccccgcagtctggaggaacaacgcgcgagcggtcccgagatccatctcaacacaccggcg
ctcatccccgacgactatctgcccgacgtgcatttgcgcctgcaactatacaagcgcctc
agcgatgtgcgcagcgacaccgccatcggtgagatcatggtggagatgatcgaccgcttc
ggacccatcccggcgccgacccgcaccctgctctgtcagacccggttgcgtcttgtcgct
acccagaccggcattgaacagatcgatgccggtcccgccggtgcccgcctgcaatttgcc
gccgaaaaccaggtggcccccgacaaaatcatccggctcatccagcaacctcacagtatc
taccagctggatggcgagcaccgcctgcgcatccgccgcgacctgcccgacggcgaagcg
cgctgtcaggaattgctgcaactcatcgaccaactgaggattcaaccatga
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