KEGG   Antarcticibacterium flavum: FHG64_05770
Entry
FHG64_05770       CDS       T06005                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
afla  Antarcticibacterium flavum
Pathway
afla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:afla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FHG64_05770 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afla03400]
    FHG64_05770 (ligD)
Enzymes [BR:afla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FHG64_05770 (ligD)
DNA repair and recombination proteins [BR:afla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FHG64_05770 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: QCY68951
UniProt: A0A5B7X2Q8
LinkDB
Position
complement(1383253..1385718)
AA seq 821 aa
MSLEEYFKKRDFATTPEPKGTMPNEDGELRFVVQRHQASRLHYDLRLEMQGTLKSWAVPK
GPSLNPADKRLAIQTEDHPLQYLTFHGTIPKGNYGAGVMEIWDTGTYRGAGGINEKEMLQ
QFIKGDLKIEFFGKKIRGTFALVRTSRGDKGNQWLLIKKTDDFSIEEKYDAEDFPPYAES
KKPQLPKEPKVKTLQPTEAIKPMLATATKKIFNDPEWIYELKWDGYRMIASVKDGNVELW
SRNGISFNTKFPRLLRDLEQLEHNVVLDGEVVVVDKKGIPDFQKLQNYDETTLGELRFYV
FDMLFLNGHSMLELPLVERKSLIKEVIEDTYHTFYCDHLEGMGSAFFKRAIDSGMEGVIA
KKADSTYTPGYRSENWLKIKAVNSTEAIICGYTESDSGNLFGSLILGMFKDEKLRYIGNV
GSGFSAKDQRKLLAKFSVLETDESPFEEKINLKGRKATWMKPVLICEVHFTEWTKTGSLR
HPVFKGLRTDKDVPEITREKVVETPPSASPESSSSGSGSSKAGHLEIGGIQVPFNNLEKI
YWPESGYTKYDLIDYYLNISEVILPYLIDRPQNLHRHPNGINQPGFYQKDNEGILPDWIE
TIKIHSKSSEKDIEYMLCQKEATLLYMANLGCIEINPWSSRIQNLENPDFTVIDIDPSEK
NTFEEVIVVAQAAKEVLDMAGVDGYCKTSGSSGIHIYLPLGAEYSYDEGRDFTKLLCYFI
NEMLPEITSMERNVKKRGGKIYLDFLQNRRGQTLAAPYCARPKPGATVSAPLKWEEVKSG
LQLADFTIKTMPKRIEKVGDLFTGVLGKGLDMEAALEKLNE
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgagcctggaagaatatttcaaaaaacgcgattttgccaccacccccgaacccaaggga
actatgcccaatgaagacggggagctgcgctttgtggtgcagcgccaccaggcaagcagg
ttgcactatgacctgcggctggagatgcagggcactctcaaaagctgggccgtccccaaa
ggtccgtcgctgaatccggccgataaacggctggcgatccagacagaagatcatcccctg
caatacctcacttttcacggcaccattcccaaaggcaattacggtgcaggggtgatggag
atctgggataccggcacctaccggggcgcaggagggataaacgaaaaggagatgctgcag
caatttataaagggggatcttaagattgaattcttcggaaaaaagatccgcggcactttt
gcccttgtgaggaccagccggggagataagggaaatcaatggcttcttatcaaaaagacc
gatgatttttctattgaagaaaagtatgatgccgaggactttccaccttacgcagagagc
aaaaaaccacagcttcctaaggagccgaaggtgaaaaccctgcagccaaccgaagctata
aaacctatgctggccaccgcaaccaaaaagatatttaatgatcccgaatggatatatgag
ctaaaatgggacggctacaggatgatcgccagtgtaaaggatggcaacgtggagctgtgg
tcccgcaacgggatttcctttaataccaaattcccaaggctgttgcgggacctggaacag
ctggagcataacgtagtcctggacggggaggtagtggtggtggataaaaagggaataccc
gatttccagaaactgcaaaattatgacgagaccaccctgggcgaactgaggttttacgtg
tttgatatgctgttcctcaacggtcacagcatgctcgagctgccattggtggaaagaaaa
tccctcatcaaagaagtgatcgaggatacttaccacactttttactgcgatcatcttgaa
ggaatgggcagcgccttttttaaacgagccatagattccgggatggaaggggtgatagcc
aaaaaagccgattccacctacacccccggctaccgcagtgaaaattggctcaagatcaaa
gccgtgaacagcacagaggcgatcatttgtggctatacagaatctgacagcggaaacctc
tttggttcccttatcctgggaatgttcaaagatgaaaagctgaggtacattgggaatgta
ggttcaggattttcggctaaagatcagcggaaactgttggcgaaattcagtgtattggaa
acagatgagagcccttttgaggaaaagatcaatcttaaagggcgcaaggccacctggatg
aaaccggtgcttatttgcgaggtgcattttacggaatggacaaaaaccggaagcctgcgg
catccggtcttcaaaggtttacgaacagataaagatgtgcccgagatcacgagggagaaa
gtggtggagacaccgccatcggcttctcctgaatcttcctcttcaggttccggctcttct
aaagccggacacctggaaataggagggatacaggtgccgttcaacaaccttgaaaaaata
tactggccggaatcgggatatactaaatatgaccttattgactattacctgaatatttca
gaagtgatcctgccgtatcttatagacaggccgcagaatttgcatcggcatcctaacggg
ataaatcagccgggattttatcagaaggacaacgagggaattttgcccgattggatcgag
acaattaagatccactcaaaatcttcagaaaaggatatagaatatatgctctgccagaag
gaggctaccctgctttacatggccaatctgggatgtatcgagatcaatccctggagttcc
cgcattcaaaatctcgagaatcccgatttcacggtgatagacatagacccttcagaaaag
aacacttttgaggaagtaatcgtggtggcgcaggcggcgaaggaggtgcttgatatggcg
ggggtagacggctactgcaagaccagcggttccagcgggatccatatttaccttcctttg
ggagcagagtattcctatgatgaaggccgtgacttcactaaactgctttgttattttatc
aatgagatgctgcccgagatcaccagcatggagcggaatgtaaaaaagcgcggcgggaag
atctacctggatttcttgcaaaaccgtcgcggccaaactctggctgctccttattgtgcc
aggccaaaacccggtgccacagtatctgccccacttaaatgggaggaagtcaaaagcgga
ctccagcttgccgatttcaccatcaaaactatgcccaaacgcatcgagaaagtaggcgac
cttttcaccggggtactcggcaaaggattggatatggaagcggctttggagaaattgaat
gaatag

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