Antarcticibacterium flavum: FHG64_05770
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Entry
FHG64_05770 CDS
T06005
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afla
Antarcticibacterium flavum
Pathway
afla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FHG64_05770 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afla03400
]
FHG64_05770 (ligD)
Enzymes [BR:
afla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FHG64_05770 (ligD)
DNA repair and recombination proteins [BR:
afla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FHG64_05770 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCY68951
UniProt:
A0A5B7X2Q8
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All DBs
Position
complement(1383253..1385718)
Genome browser
AA seq
821 aa
AA seq
DB search
MSLEEYFKKRDFATTPEPKGTMPNEDGELRFVVQRHQASRLHYDLRLEMQGTLKSWAVPK
GPSLNPADKRLAIQTEDHPLQYLTFHGTIPKGNYGAGVMEIWDTGTYRGAGGINEKEMLQ
QFIKGDLKIEFFGKKIRGTFALVRTSRGDKGNQWLLIKKTDDFSIEEKYDAEDFPPYAES
KKPQLPKEPKVKTLQPTEAIKPMLATATKKIFNDPEWIYELKWDGYRMIASVKDGNVELW
SRNGISFNTKFPRLLRDLEQLEHNVVLDGEVVVVDKKGIPDFQKLQNYDETTLGELRFYV
FDMLFLNGHSMLELPLVERKSLIKEVIEDTYHTFYCDHLEGMGSAFFKRAIDSGMEGVIA
KKADSTYTPGYRSENWLKIKAVNSTEAIICGYTESDSGNLFGSLILGMFKDEKLRYIGNV
GSGFSAKDQRKLLAKFSVLETDESPFEEKINLKGRKATWMKPVLICEVHFTEWTKTGSLR
HPVFKGLRTDKDVPEITREKVVETPPSASPESSSSGSGSSKAGHLEIGGIQVPFNNLEKI
YWPESGYTKYDLIDYYLNISEVILPYLIDRPQNLHRHPNGINQPGFYQKDNEGILPDWIE
TIKIHSKSSEKDIEYMLCQKEATLLYMANLGCIEINPWSSRIQNLENPDFTVIDIDPSEK
NTFEEVIVVAQAAKEVLDMAGVDGYCKTSGSSGIHIYLPLGAEYSYDEGRDFTKLLCYFI
NEMLPEITSMERNVKKRGGKIYLDFLQNRRGQTLAAPYCARPKPGATVSAPLKWEEVKSG
LQLADFTIKTMPKRIEKVGDLFTGVLGKGLDMEAALEKLNE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaagaatatttcaaaaaacgcgattttgccaccacccccgaacccaaggga
actatgcccaatgaagacggggagctgcgctttgtggtgcagcgccaccaggcaagcagg
ttgcactatgacctgcggctggagatgcagggcactctcaaaagctgggccgtccccaaa
ggtccgtcgctgaatccggccgataaacggctggcgatccagacagaagatcatcccctg
caatacctcacttttcacggcaccattcccaaaggcaattacggtgcaggggtgatggag
atctgggataccggcacctaccggggcgcaggagggataaacgaaaaggagatgctgcag
caatttataaagggggatcttaagattgaattcttcggaaaaaagatccgcggcactttt
gcccttgtgaggaccagccggggagataagggaaatcaatggcttcttatcaaaaagacc
gatgatttttctattgaagaaaagtatgatgccgaggactttccaccttacgcagagagc
aaaaaaccacagcttcctaaggagccgaaggtgaaaaccctgcagccaaccgaagctata
aaacctatgctggccaccgcaaccaaaaagatatttaatgatcccgaatggatatatgag
ctaaaatgggacggctacaggatgatcgccagtgtaaaggatggcaacgtggagctgtgg
tcccgcaacgggatttcctttaataccaaattcccaaggctgttgcgggacctggaacag
ctggagcataacgtagtcctggacggggaggtagtggtggtggataaaaagggaataccc
gatttccagaaactgcaaaattatgacgagaccaccctgggcgaactgaggttttacgtg
tttgatatgctgttcctcaacggtcacagcatgctcgagctgccattggtggaaagaaaa
tccctcatcaaagaagtgatcgaggatacttaccacactttttactgcgatcatcttgaa
ggaatgggcagcgccttttttaaacgagccatagattccgggatggaaggggtgatagcc
aaaaaagccgattccacctacacccccggctaccgcagtgaaaattggctcaagatcaaa
gccgtgaacagcacagaggcgatcatttgtggctatacagaatctgacagcggaaacctc
tttggttcccttatcctgggaatgttcaaagatgaaaagctgaggtacattgggaatgta
ggttcaggattttcggctaaagatcagcggaaactgttggcgaaattcagtgtattggaa
acagatgagagcccttttgaggaaaagatcaatcttaaagggcgcaaggccacctggatg
aaaccggtgcttatttgcgaggtgcattttacggaatggacaaaaaccggaagcctgcgg
catccggtcttcaaaggtttacgaacagataaagatgtgcccgagatcacgagggagaaa
gtggtggagacaccgccatcggcttctcctgaatcttcctcttcaggttccggctcttct
aaagccggacacctggaaataggagggatacaggtgccgttcaacaaccttgaaaaaata
tactggccggaatcgggatatactaaatatgaccttattgactattacctgaatatttca
gaagtgatcctgccgtatcttatagacaggccgcagaatttgcatcggcatcctaacggg
ataaatcagccgggattttatcagaaggacaacgagggaattttgcccgattggatcgag
acaattaagatccactcaaaatcttcagaaaaggatatagaatatatgctctgccagaag
gaggctaccctgctttacatggccaatctgggatgtatcgagatcaatccctggagttcc
cgcattcaaaatctcgagaatcccgatttcacggtgatagacatagacccttcagaaaag
aacacttttgaggaagtaatcgtggtggcgcaggcggcgaaggaggtgcttgatatggcg
ggggtagacggctactgcaagaccagcggttccagcgggatccatatttaccttcctttg
ggagcagagtattcctatgatgaaggccgtgacttcactaaactgctttgttattttatc
aatgagatgctgcccgagatcaccagcatggagcggaatgtaaaaaagcgcggcgggaag
atctacctggatttcttgcaaaaccgtcgcggccaaactctggctgctccttattgtgcc
aggccaaaacccggtgccacagtatctgccccacttaaatgggaggaagtcaaaagcgga
ctccagcttgccgatttcaccatcaaaactatgcccaaacgcatcgagaaagtaggcgac
cttttcaccggggtactcggcaaaggattggatatggaagcggctttggagaaattgaat
gaatag
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