Acidithiobacillus ferrooxidans ATCC 23270: AFE_0369
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Entry
AFE_0369 CDS
T00810
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFE_0369 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_0369 (mfd)
Enzymes [BR:
afr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFE_0369 (mfd)
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFE_0369 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACK79468
UniProt:
B7J4B9
LinkDB
All DBs
Position
complement(316579..320028)
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AA seq
1149 aa
AA seq
DB search
MDRSLSLGTPPRAGAARAFSQIYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWR
FFAPDLPAPLVFPDREILPYDRLAPPADATATRLATLATLPEWRGVCLAPLSAVLQRLPP
RSFLDQHAFVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGSPLP
YRIELFDRVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSGDP
QRAEIYRAASRGQAPQGAEHYLPLFFPECSHLLMHFPVDGVVFLPPGLEASARHIRQDWQ
ERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEGDAERLPTAPLPDLHGSP
EAPLASLDTFLRHLPTTGRVILAAESPGRQEALSERLGKSGLLPSRVHDWPEFLAGTERI
AITVAPLERGLLIKENGLVRLALVSEAQIFGDRVFAQRRSANARQRSIEGLVRDLGELQP
GDAVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRIARYVGNGAT
EPVLSRLGSNHWEKVKAKARQKAVDAASELLDIYARRAARTGRAFPEPDDAYWEFVSRFP
FEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAVLVPT
TLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTHRLLQKDV
AFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIAT
PPQRRQPVRTFVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLRRLLPEARL
RVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRADKFGLAQLHQ
LRGRVGRSHQRAYAYLFTPDLRAMSDDARRRLDAIQSLEDLGVGFALASHDLEIRGAGEL
LGEEQSGHMDEVGFTLFMEWLDDAVEAIRAGRDPRSLEEQRTSGPEIHLNTPALIPDDYL
PDVHLRLQLYKRLSDVRSDTAIGEIMVEMIDRFGPIPAPARTLLCQTRLRLVAIQTGIEQ
IDAGPAGARLQFAAENQVAPDKIIRLIQQPHSIYQLDGEHRLRIRRDLPDGEARCQELLQ
LIDQLRIQP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttggatcgaagtctttctctcggcaccccgccgcgcgccggggcggcacgcgcatttagt
caaatttacggtgctgcggatagctggctggcagcgcagatgacgcggcagtggcagcgc
ccgctactgattctgctgccgaacgcccgcgacgtggaggaatggcagcgcgagtggcgt
tttttcgcaccggacttgcccgcgccgctggttttcccggaccgcgaaatccttccctat
gaccgcttggcgccgccggcagatgccacggccacccgactggctacccttgccaccttg
ccggaatggcgtggcgtttgtctcgcccccctgtccgccgtcctgcaacgcctgccaccg
cgcagtttcctcgaccagcacgcttttgtcctagccgtgggcgaccacctgagtccggaa
ggttttcgccagcgcctgatcgacgccggctaccgcaacgtcagtgaagtctctgaggcc
ggcgaattggcctggcgtggtggaatcatcgatctctttcccagcggtagccccctgccc
tatcgcatcgagctcttcgatagggtcgtggaaagcatccgtgcctttgatccggaaacc
cagcgtaccctgcaaaaggtcgagggggtctctctgctcccggcgcgggaagtgccggtg
gacaccgccgcgctacaggaatttcgcagccgcttccgcgcccggttcagcggtgacccg
caacgcgccgagatataccgggcggccagccggggacaggcgccccaaggcgccgagcat
tatcttccgctcttctttccggagtgcagccacctgctgatgcactttcccgtagacggc
gtcgtctttctcccgcccggtctggaagcatccgcccggcacattcgtcaggactggcag
gagcgctatgaggaacggagccacgacacggtgcatcccatactgccgcctgatgaactg
ctcctcccccccagtgaatgggaagatgtcctgcgcggtcgggcgcgggtatatgggcaa
caggagggcgatgcggagcgtctgccgaccgctcccctccccgatcttcatggcagcccg
gaagcgccactagcctcactggatacttttcttcgccatctgccgaccacgggccgggtc
atcctcgccgctgaatcacccggccgtcaggaagccctgtcggaacggcttggcaagagc
ggactgctccccagccgggtgcatgactggccggagttcctggccggtacggaacggatc
gccatcaccgtagcacccctggaacgcggcctgctcatcaaggaaaatggcctggtcaga
ctggcgctggtctccgaggcgcagatttttggtgatcgcgtctttgcccagcggcgtagt
gccaacgcccgacagcgcagcattgaaggcttggtccgcgatctcggcgagttacagccg
ggtgatgccgttacccatgaggaatacggcatcggccgttttcagggcatggctacgccc
tttgcctcccagggagacatcaatgaatatgtggtcctggagtacgccaacggcgatctc
gtctacgtcccggcggatcatctggatcgtatcgcccgctacgtgggtaatggtgcgacg
gaaccggtgctctcccgcctcggcagcaatcactgggaaaaagtcaaggccaaggcgcgg
caaaaggccgtcgatgccgccagcgaactgctggacatctatgctcgtcgcgcggcgcgc
accggtcgggctttccccgaaccggatgacgcctattgggaattcgtgtcccgctttccc
tttgaggaaaccccggatcagcagcaggccattgacgccgtcattgccgatatgaccagc
ccccaccccatggaccgcctggtctgcggcgatgtcggcttcggcaaaaccgaggtggcg
ctccgtgcggcttttctggcggcgcacagtggtgcgcaggtggccgtactggtccccacc
accctgctcgcccagcagcattacgagaatttccggaaccgctgcgccgggctgcccctg
cgggtggaagtgctctcccgtttccagaatgccaaaacgcacaagcaagtgctcacggca
gtgtccgtaggggaggtggatatcctgatcggcacccaccgcctgctgcaaaaggatgtc
gccttccacgacctggggctgctgattctggatgaggagcatcgcttcggggtacgccag
aaggagcggatcaaggccctgcgcgccgaggtggatatcctcaccctgaccgcaacgccg
atcccccgcactctcaatctctcgctggccggcctgcgtgacttatccatcatcgccacg
ccaccccagcgccgccagccggtacgcacctttgtgcaaatctgggatgatgcgacggtg
atcgaagcctgccagcgcgagctgcatcgcggcggtcaggtatattttctgcataatgag
gtacgcgacatcgagcgcatggcggccacactgcgccgcctgctgccggaagcgcgcctg
cgcgtggcccatggccagatgcccgagggcgaactggaagcggtgatgctggatttttac
catcagcgcttcgacatcctcctctgcaccaccatcatcgagtcggggatcgacaacccc
catgccaacaccatcctcatcaaccgcgccgataaatttggtctggcccagctccatcag
ttgcgcggccgggttggtcgttcccatcaacgcgcctacgcctacctgttcaccccggac
cttcgggccatgagcgacgatgcccggcgccgcctcgacgccatccagtccctggaagat
ctgggcgtcggctttgccctggccagccacgatctggaaatccgcggtgctggcgagttg
ctcggcgaagagcagagcgggcacatggatgaggtggggttcaccctcttcatggaatgg
ctggacgatgccgtggaagccatccgtgccgggcgggatccccgcagtctggaagaacaa
cgcacgagcggtcccgagatccatctcaacacaccggcgctcatccccgacgactacctg
cccgacgtgcatttgcgcctgcaactatacaagcgcctcagcgatgtgcgcagtgacacc
gccatcggtgagatcatggtggagatgatcgaccgcttcggacccattccggcgccggcc
cgcaccctgctctgtcagacccggttgcgtcttgtcgctatccagaccggcattgaacag
atcgatgccggccccgccggtgcccgcctgcaattcgccgccgaaaaccaggtggccccc
gacaaaatcatccggctcatccagcaacctcacagcatctaccaactggatggcgagcac
cgcctgcgcatccgccgcgacctgcccgacggcgaagcgcgctgtcaggaattgctgcaa
ctcatcgaccaactgaggattcaaccatga
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