Actinoplanes friuliensis: AFR_05290
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Entry
AFR_05290 CDS
T02892
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afs
Actinoplanes friuliensis
Pathway
afs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFR_05290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afs03400
]
AFR_05290
Enzymes [BR:
afs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFR_05290
DNA repair and recombination proteins [BR:
afs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFR_05290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
SLFN-g3_helicase
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGZ39347
UniProt:
U5VRA9
LinkDB
All DBs
Position
1158188..1161799
Genome browser
AA seq
1203 aa
AA seq
DB search
MQLSGLIPAALRDRGLARARDLAHKGGADSDALDLTAPASLRPFVVAAVAGPAETGGAGR
PVLAVTATSREADDLADALGCLISPDRVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLA
HPENGPVQVVVAPVRSLLQPQLKGLGDLEPVELTPGGTAELEGVARRLTDMAYARVDLVT
KRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEEVQRLWAPPCREL
LLTEPVRTRAAQLAEEHPEIAEILDKLAEGIPVEGMESLAPALMEGTDSMELLIDCMPRG
THVLLCDPERIRTRAHDLTRTSDEFLEAGWAAAAVGGQAPIDVGAAAFKTLADVRAHAAV
LHQPWWTVSPFGLAEADAPESETPWLDTPAVEVSPDLGDAIALHAQPVPLYHGDTAKLAA
DLQTWSSDNWSIALVFEGHGTAQRATELLRDAGLGVTPVDSIPVAVEPGQLLVTCGGLNH
GFVDEGSKLAVITGNDITGGRGASTKDMRKMPSRRRNTIDPLELKPGDHVVHEQHGIGKY
VELVQRTVNGAEREYMVIEYAASKRGQPGDRLFVPTDQLDQLSRYVGGESPALHKMGGSD
WQKSKARARKAVREIAAQLIQLYAARQASKGHSFGPDTPWQRELEDAFPYTETPDQMAAI
IEVKHDMEQAIPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAILVPTTLLAQQHYNTF
AERMSQFPVTIKQLSRFQTPKEAAQTLEDAAAGTADIVIGTHRLLAAATRFKNLGMVIVD
EEQRFGVEHKEQLKTLRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTF
VGAYDDKQVAAAIHRELLRDGQVFYLHNRVESIDKAARRLRELVPEARVAVAHGQMGEEA
LEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLSQLHQIRGRVGRGRER
AYAYFLYPREKPLTETAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEG
VGFDLYVRMVGEAVSAFKGERPEEEPEVKIDLPIDAHLPTDYIAVERLRLEMYRKLAEAR
DSARLDEVVAEMTDRYGEPPTEVANLIAVARFRLVARAYGLTDVSVQGKHLRFSPLPLPD
SKQMRLKRYHPDSVYKTANDQVSVPRPSTRRVGGEPLRDQALLQWCAQLLKDVLGDVPAK
VPA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcagtggcctgatcccggccgccctgcgtgaccgcgggctggcccgggcccgc
gatctggctcacaagggcggagccgactccgacgccctcgacctcaccgcacccgcctcg
ctgcgcccgttcgtcgtggccgcggtcgccggaccggccgagaccggtggcgccggccgt
ccggtcctcgccgtgaccgcgaccagccgcgaggccgacgacctggccgacgcgctcggc
tgcctgatctcgcccgaccgcgtcgccgtcttcccgtcctgggagacgctgccgcacgag
cgcctctccccgcgttccgacaccgtcgggcgccgcctggccgtgctgcgccggctcgca
caccccgagaacggcccggtccaggtggtggtcgcgcccgtgcgcagcctgctccagccg
cagctcaaggggctcggcgacctcgagcccgtcgagctcacccccggtgggacggccgag
ctcgagggtgtcgcgcgccggctcaccgacatggcgtacgcccgggtcgacctggtcacc
aagcgcggcgaattcgccgtccgcggtggcatcctcgacgtcttcccgccgaccgacgag
cacccgtcccgggtcgagttctggggcgacgaggtggaggagatccgcaccttcgccgtc
gccgaccagcggaccatcgaggaggtccagcggctctgggcgcccccgtgccgtgagctg
ctgctcacggagccggtgcggacccgggccgctcagctcgccgaggagcaccccgagatc
gccgagatcctcgacaagctcgccgagggcatcccggtcgagggcatggagtcgctggca
cccgccctgatggagggcaccgactcgatggagttgctcatcgactgcatgccccgcggc
acccacgtgctgctctgcgaccccgagcggatccgcacccgggcccacgacctgacccgg
acctcggacgagttcctcgaggccggctgggccgcggccgccgtcggtggccaggccccg
atcgacgtcggcgccgccgccttcaagaccctggccgacgtacgcgcccacgccgcggtc
ctgcaccagccctggtggaccgtctcgccgttcggcctggccgaggccgacgcgccggag
tccgagacgccctggctcgacacccccgcggtggaggtctcgcccgacctcggtgacgcg
atcgccctgcacgcccagcccgtgccgctctaccacggcgacaccgccaaactggccgcc
gacctgcagacctggtcgtccgacaactggtcgatcgcgctggtcttcgagggccacggc
accgcccagcgggccaccgagctgctgcgcgacgccggtctcggcgtcaccccggtcgac
tcgatcccggtcgccgtcgagccgggtcagctgctcgtcacctgcggcggtctcaaccac
ggctttgtcgacgagggctcgaagctggccgtcatcaccggcaacgacatcaccggcggc
cgcggcgcgtccaccaaggacatgcgcaagatgcccagccggcggcgcaacaccatcgac
ccgctggagctcaagcccggcgaccacgtcgtgcacgagcagcacggcatcggcaagtac
gtcgagctggtgcagcgcacggtcaacggcgccgagcgcgagtacatggtcatcgagtac
gccgcctccaagcgcggccagcccggtgaccgcctcttcgtgcccaccgaccagctcgac
cagctctcccggtacgtcggtggcgagtcgcccgcgctgcacaagatgggcggctccgac
tggcagaagagcaaggcccgggcgcgcaaggccgtgcgcgaaatcgctgcccagctcatc
cagctgtacgccgcccgccaggcgtcgaagggccactcgttcggtcccgacacgccgtgg
cagcgcgagctcgaggacgctttcccgtacacggagacgcccgaccagatggccgcgatc
atcgaggtcaagcacgacatggagcaggcgatcccgatggaccgcctgatctgcggcgac
gtcgggtacggcaagaccgagatcgcggtccgcgcggcgttcaaggcggtgcaggacggc
aagcaggtcgcgatcctggtgccgacgacgctgctcgcccagcagcactacaacacgttc
gccgagcggatgagccagttcccggtgaccatcaagcagctgtcgcgcttccagacgccg
aaggaagccgcccagacgctggaggacgctgccgccggcaccgccgacatcgtcatcggc
acccaccggctgctggccgccgcgacccgcttcaagaacctcggcatggtcatcgtcgac
gaggagcagcggttcggcgtcgagcacaaggagcagctcaagaccctgcgggcgtccgtc
gacgtgctcaccatgtcggccacgccgatcccgcggacgctcgagatggcgatcaccggc
atccgcgagatgtcgaccatcgccaccccgcccgaggagcggcaccccgtgctgacgttc
gtgggggcgtacgacgacaagcaggtggccgcggcgatccaccgcgagctgctgcgcgac
ggccaggtcttctatctgcacaaccgcgtcgagtcgatcgacaaggccgcccggcgcctg
cgcgagctggtgcccgaggcccgggtcgccgtcgcgcacggccagatgggtgaggaagcg
ctcgagaaggtgatggtcggcttctgggagaaggagttcgacgtcctggtctgcacgacc
atcgtggagtccggcatcgacatcccgaacgccaacaccctcatcgtcgagcgtgccgac
ctgctcggactctcccagctgcaccagatccgcggccgggtcggccggggccgggaacgc
gcctacgcctacttcctctacccgagggagaagccgctcaccgagaccgcccacgagcgg
ctcgcgaccatcgcccagcacaccgagctcggcgccggcatgtacgtcgcgatgaaggac
ctcgagatccgcggcgccggcaacctgctcggcggcgagcagtccggccacatcgagggt
gtcggcttcgacctgtacgtgcggatggtcggcgaggcggtcagcgccttcaagggcgaa
cgccccgaggaggagccggaggtcaagatcgacctgccgatcgacgcgcacctgccgacc
gactacatcgcggtcgaacgcctgcgcctggagatgtaccgcaagctcgccgaagcccgc
gacagcgcccgcctcgacgaggtcgtcgccgagatgaccgaccgttacggcgagccgccg
accgaggtggccaacctgatcgcggtggcgcggttccggctggtggcccgcgcgtacggc
ctcaccgacgtgtccgtgcagggcaaacacctgcggttctcgccgctgccgctgccggac
tccaagcagatgcggctcaagcggtaccacccggactcggtctacaagaccgccaacgac
caggtcagcgtgccccggccgagcacccggcgggtcgggggcgaaccgctgcgcgaccag
gccctgctgcagtggtgtgcgcagctgctgaaggacgtcctcggtgacgttccggccaag
gtgcccgcatga
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