Actinoplanes friuliensis: AFR_28570
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Entry
AFR_28570 CDS
T02892
Name
(GenBank) DNA polymerase LigD ligase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afs
Actinoplanes friuliensis
Pathway
afs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AFR_28570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afs03400
]
AFR_28570
Enzymes [BR:
afs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AFR_28570
DNA repair and recombination proteins [BR:
afs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AFR_28570
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGZ43975
UniProt:
U5W7K1
LinkDB
All DBs
Position
complement(6214880..6216049)
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AA seq
389 aa
AA seq
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MSAGEVIEPMLATLGEPPAGDDVALEFKWDGIRCLAYVDDGVRLFSRNGRDITTGYPELA
ELVPLAAGHRVVLDGELVALDSAGVASFERLQQRMHLSAPAPALVTAVPVVYEVFDLLFL
DGEATTALPYLQRRELLAGLDLAGDAVRVPAHFVNADPAAVLTAARSQGLEGIVAKRLGS
TYQSGRRSRDWIKVPFNQTQEIVVIGWKPGGGRRSGTIGSLLTAVTGPDGNLAYAGGVGT
GFTQAMLEQLQGMLAPLSRPTPAVAGIPRVDARGARWVEPVIVGEVSFRNWTGDGKMRHP
SWRGLRPDKSPARVPRVTPPVETIDGVMQTLGGSWRVEVVRRGSVTSYRIVHGEDVIDWL
PDIADVERILTRAGVAMEALQPAQRRTSA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccggcgaggtgatcgagccgatgctggccacgctcggggagccgccggccggg
gacgacgtcgcgctggagttcaagtgggacggcatccgctgcctcgcctacgtcgacgac
ggcgtgcggttgttctcgcggaacggccgggacatcaccaccggttaccccgagctggcc
gagctggtacccctcgcggccgggcatcgtgtggtcctcgacggggagctcgtcgccctg
gattccgcgggggtcgcctcgttcgagcggctgcagcagcgcatgcacctcagcgcacct
gcgccggcgctcgtcaccgccgtaccggtggtctatgaagtctttgacctgctgtttctt
gacggtgaggccacgaccgcgctgccttatctccagcgtcgcgagctgctggccggtctt
gatctggccggtgatgcggtgcgcgtcccggcgcattttgtgaacgccgacccggcggcg
gtgctgaccgccgcccgcagccagggcctcgaggggatcgtcgccaagcggctggggtcg
acctaccagagcggccggcgctcccgcgactggatcaaggtgccgttcaaccagacccag
gagatcgtggtcatcggctggaaacccggcggcggacgccgctccgggaccatcggttcg
ctcctgaccgcggtcaccggacctgacggcaacctcgcgtacgccgggggagtgggcacg
ggcttcacccaggcgatgctcgagcagctccagggcatgctggcgccgctgagccgcccc
acacccgcggtggcgggcataccgcgtgtcgatgcgcggggtgcccgctgggtggaaccg
gtgatcgtcggtgaggtgtcgttccggaactggaccggcgacggcaagatgcgccacccg
tcgtggcgtggtctgcggccggacaagagcccggcgcgggtgccccgggtgacaccaccg
gtcgagacgatcgacggtgtcatgcagaccctcggcggctcgtggcgggtcgaggtggtg
cgccgcggcagcgtcacgtcgtaccggatcgtgcacggtgaggacgtgatcgactggctg
ccggacatcgccgacgtcgagcgcatcctgacccgcgccggggtggcaatggaagctctg
cagcccgcccagcgccggacatcggcttag
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