KEGG   Archaeoglobus fulgidus DSM 4304: AF_0623
Entry
AF_0623           CDS       T00011                                 
Name
(GenBank) DNA ligase (lig)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
afu  Archaeoglobus fulgidus DSM 4304
Pathway
afu03030  DNA replication
afu03410  Base excision repair
afu03420  Nucleotide excision repair
afu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AF_0623
   03410 Base excision repair
    AF_0623
   03420 Nucleotide excision repair
    AF_0623
   03430 Mismatch repair
    AF_0623
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afu03032]
    AF_0623
   03400 DNA repair and recombination proteins [BR:afu03400]
    AF_0623
Enzymes [BR:afu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AF_0623
    6.5.1.6  DNA ligase (ATP or NAD+)
     AF_0623
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AF_0623
DNA replication proteins [BR:afu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    AF_0623
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     AF_0623
DNA repair and recombination proteins [BR:afu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AF_0623
   NER (nucleotide excision repair)
    Other NER factors
     AF_0623
   MMR (mismatch excision repair)
    Other MMR factors
     AF_0623
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AAB90616
UniProt: O29632
Structure
LinkDB
Position
560042..561712
AA seq 556 aa
MMLFAEFAEFCERLEKISSTLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDEREL
GVGIGLLYEALENVSGVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRE
TFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMRLGVGEGIMRDAIARA
FRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMMLAQVAESLESAVR
EMRTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKPGVILDGEV
IAVKEGKPMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDGECIDLPLRERRKLLE
SAVNESEKIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVK
AIMETLDLVVVGGEWGEGKRSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEM
FRPLIVSQQGKKVEFIPKYVFEVAYQEIQKSPKYESGYALRFPRFVRLRDDKDVDEADTI
ERVENLYKLQFEVKRQ
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgatgttgtttgccgagtttgccgagttctgcgaaaggctcgaaaaaatatcgtcaaca
cttgagcttaccgcgaggatagctgcgtttcttcaaaaaattgaggatgagagagacctt
tatgacgttgtcctttttatcaccggcaaggtttacccgccgtgggatgagagggagctt
ggtgtcgggattggattgctctacgaggctcttgaaaacgtaagcggagtcaagagaagc
gagatagagagtatgataagggagtacggagacctcggtctcgttgcggagcagctgata
aagaagaagaaaatgacaaccctcgccttcgaggagcttacagtgaggaaagtgagggag
accttcgatgagatcgcatctttgacgggagaagggagcatgaaaagaaagattatgctc
ctcaccggcctctacggtctcgcaactccactagaggcgaggtaccttacaaggctgatt
ttgaatgagatgcgccttggtgttggagagggcataatgagggatgctatagccagagct
ttcagggcggatccggaaacggttgagagggcttacatgatcaccaacgacctcggcagg
gtggcagtggttgccaagaaagagggcgaggagggcttgaggaaaatgaagatagagatt
cacattccggtcagaatgatgctcgcacaggttgctgagagcctcgaaagcgcagttaga
gagatgagaacagcggcggtggagtggaagttcgacgggagcagagttcaggttcactgg
gatgggagcagagttacaatctactcaagaaggcttgagaacgttaccaacgccttgccg
gacatagtggaggagataaagaagagcgtcaagccgggcgtcattcttgacggagaagtt
attgcggtcaaggaaggaaagccgatgccgtttcaacatgtgctgagaaggttcaggaga
aagcacgatgtggcaaagatggttgagaaaataccgcttgaagctcacttctttgacatt
ctctaccacgatggagagtgcatagaccttccgctgagggagaggagaaagctactggaa
tccgcagtaaatgagtcggagaaaatcaaactggcgaagcagatagttacggacagtgtt
gatgaggtaagaaagatgtacgatgaggctatcagcgcagggcacgagggagtgatgatc
aagctaccctcatccccctacattccggggaagaggggcaagaactggcttaaggtcaag
gcgataatggaaactctcgacctcgttgtggttggaggagagtggggagagggaaaaagg
agtcactggttaagctcctttgagctcgcctgccttgatccggtaacgggcaaactgctt
aaggtaggaagggtcgccacgggcttcactgaggaggatctggaggagctgacagagatg
ttcagacccctcatcgtctcgcagcaggggaagaaggtggagttcatcccgaagtacgtt
ttcgaggttgcgtatcaggagattcagaaaagcccgaaatacgagagcggttatgcgctg
agattccccaggttcgtcagactgagggatgataaggatgttgacgaggcggatacgata
gagagggttgagaacctttataagctacagttcgaggtaaagagacaatga

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