Archaeoglobus fulgidus DSM 4304: AF_1725
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Entry
AF_1725 CDS
T00011
Name
(GenBank) DNA ligase, putative
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afu
Archaeoglobus fulgidus DSM 4304
Pathway
afu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AF_1725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afu03400
]
AF_1725
Enzymes [BR:
afu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AF_1725
DNA repair and recombination proteins [BR:
afu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AF_1725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AAB89526
UniProt:
O28549
LinkDB
All DBs
Position
complement(1548270..1549211)
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AA seq
313 aa
AA seq
DB search
MSWFDKKIKPMLAVRSKPFSSDDHIYEVKWDGTRCLAFVDVEGKRVRLQNRRLLDITYRY
PEIKLLDAVERNAILDGEVVVIKDGKPSFPLLQKREHVDSRFKIEILSKTIPAVYIVFDV
LYCDGWVVDLELMERKKILSEVLQSRGRVVVEEWIEGKGEEFYRKAVEMGLEGIVAKKKD
GRYLIGKRSRLWKKIKKRNTLDCVIVGWIEGEGERAKTFGSLVLAVYEDGRLKHVGNVGT
GFDSEFLNWFSERLREIEVAKPHFEIETKNVHWVKPRYVCEVEFLEFTEDGKLRAPVFLR
LREDKSPDECRID
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagctggttcgataaaaaaatcaagccgatgcttgctgtcaggtcaaagcccttcagc
agcgacgaccacatttacgaggttaagtgggatggaacgaggtgcctcgctttcgttgat
gtggagggaaagagggtcaggctgcagaacagaaggctactggacataacctaccgctac
cccgagattaaactgctggatgctgtcgagagaaacgcgattctcgacggtgaggttgtt
gtgataaaggacggtaagccctccttccctcttctgcagaaaagagagcatgtggacagc
agattcaagattgagattctcagcaaaaccattcccgcagtttacatagttttcgacgtt
ctttactgcgacggctgggttgtggatttggagctgatggagaggaagaagatactctcc
gaagttctccaaagcaggggaagggttgtggtggaggagtggattgaaggtaaaggggag
gagttctacagaaaagcggtggaaatggggcttgaagggattgtagcaaagaaaaaggat
ggaagatacttgataggcaaaaggagcagactctggaagaagataaagaagaggaacaca
ctggactgcgttatagtgggatggattgagggagagggagagagggcaaagacctttggc
tccctcgttctggctgtttacgaggatggaaggcttaaacatgtcggcaacgttggtacc
ggctttgattctgagtttctgaactggttctcggagaggttgagggaaatagaggttgca
aagccgcacttcgaaatcgagaccaaaaacgttcactgggttaagccgagatacgtctgc
gaggtggagttcctcgagttcaccgaagacgggaagctcagagcaccggtgtttctgaga
ctgagagaggacaaaagtcccgatgaatgcaggattgattaa
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