Aythya fuligula (tufted duck): 116500170
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Entry
116500170 CDS
T07966
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03030
DNA replication
aful03410
Base excision repair
aful03420
Nucleotide excision repair
aful03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116500170 (LIG1)
03410 Base excision repair
116500170 (LIG1)
03420 Nucleotide excision repair
116500170 (LIG1)
03430 Mismatch repair
116500170 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aful03032
]
116500170 (LIG1)
03400 DNA repair and recombination proteins [BR:
aful03400
]
116500170 (LIG1)
Enzymes [BR:
aful01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116500170 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
116500170 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
116500170 (LIG1)
DNA replication proteins [BR:
aful03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
116500170 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
116500170 (LIG1)
DNA repair and recombination proteins [BR:
aful03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
116500170 (LIG1)
NER (nucleotide excision repair)
Other NER factors
116500170 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
116500170 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
116500170
NCBI-ProteinID:
XP_032060978
UniProt:
A0A6J3EHY8
LinkDB
All DBs
Position
32:143576..165706
Genome browser
AA seq
713 aa
AA seq
DB search
MVAMGVVMQMKDAAGPMAVGDSTVGGVWGHPWVLGVPVVPPLPPPTLWCPRSPPPLDPSQ
YDPAKSGYHPLRDACWGHGQSVPYLAVARTFERIEEASARLKIIETLSNFLRSVLALSPG
ELLPCLRLCLNRPGAASEGLELGIGESLLTRALAQATGRQLAQIRSEAQDKGDLGLVAES
SRCTQRTVLAPAPLSAAGVLGKLREMATMSGNASSSKKIGIIKGLFVACRHSEARYLVRS
LSGKLRIGLAEQSVLTALAHAVALTPPGQGWPPAVLDAGQGMAPEARRAWLEEQSRILKQ
TFCELPDYAAIVPVLLEHGLEKLPQHCGITPGVPLKPMLAQPARGVGELLKRFEEAAFTC
EYKYDGERAQIHVLESGAVFIYSRNQENTTAKYPDLVDRIPKVLKPGVRSCILDAEAVAW
DRTTRQIQPFQVLMTRKRKDVDAAAIKVQVCLYAFDLLYLNGEPLVRQPLSARRKLLRES
FEEVEGEFVFATSADTRSAEEVSEFLDKAIKASCEGLMVKTLEVDATYEIAKRSHKWLKL
KKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFTEESL
EKHYGFLKEHVLAQPRPYYRWDSGAAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVDEE
KGISLRFPRFLRVREDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGEDEEFY
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgatgggcgtggttatgcagatgaaggacgcggccgggccaatggcggtgggt
gacagcacagttgggggggtgtgggggcacccatgggtgctgggggtccccgtcgtgcca
ccgctgcccccccccaccctgtggtgtccccgcagccccccgccgctggacccgtcccag
tacgaccccgccaagagcgggtaccacccgctgcgggacgcctgctgggggcatgggcaa
agtgtcccctacctggcggtggctcgcaccttcgagcgcatcgaggaagcctcagcccgg
ctgaagatcatcgagaccctcagcaacttcctgcgctcggtgctggccctgtccccgggg
gagctcctgccctgcctgcgcctctgcctcaaccgcccgggggccgcctccgaggggctg
gagctgggcatcggcgagagcctcctgacccgcgccctcgcccaggccaccggccggcag
ctggcgcagatccgcagcgaggcgcaggacaagggggacctggggctggtggcggagagc
agccgctgcacccagcgcaccgtgctggctcccgccccgctcagtgctgctggcgtgctg
ggcaagctgcgggagatggccaccatgtcgggcaacgcttcgtccagcaagaagatcggc
atcatcaaggggctcttcgtcgcctgccggcactcggaggcacgctacctcgtccggtcg
ctcagcgggaagctgcgcatcgggctggccgagcagtcggtgctcaccgccctggcgcac
gccgtggcgctcacccccccggggcaagggtggccgccggctgtgctggacgctgggcag
ggcatggcccccgaggcacgcagggcatggctggaggagcagagccgcatcctcaagcag
accttctgcgagctgcctgactacgctgccatcgtcccggtgctgctggagcacgggctg
gagaagctgccccagcactgcggcatcaccccaggtgtccccctgaagccaatgctggcc
cagcctgcccgtggcgtaggggagctgctgaagcgctttgaggaggcagcgttcacctgc
gagtataaatatgacggcgagcgagcccagatccacgtcctggagagcggggccgtcttc
atctacagccgcaaccaggagaacaccaccgccaagtaccccgacctcgtggaccgcatc
cccaaggtgctgaagcccggtgtgcgctcctgcatcctggatgcagaggccgtggcgtgg
gatcggaccacgaggcagatccagcccttccaggtgctgatgacgaggaagaggaaggac
gtggacgccgctgccatcaaggtgcaggtctgcctctacgccttcgacctgctctacctc
aacggggagcccctggtgcgtcagcccctgtctgcgcggcgcaagctcctgcgggagtcc
tttgaggaggtggagggcgagttcgtcttcgccacctccgccgacacccgcagcgccgag
gaggtctcggagttcctcgacaaggccatcaaggcctcctgcgagggcctcatggtgaag
accctggaggtggacgccacctacgagatcgccaagcggtcgcacaagtggttgaagctg
aagaaggactacctggacgggcttggggacacgctggacctggtggtcatcggcgcctac
ctgggcaagggcaagcgtgcaggcatctacgggggcttcctgctggcctgctacgacgag
gagagcgaggagtaccagagcatctgcaagattggcaccggtttcacagaggagagcctg
gagaagcactacggcttcctcaaggagcacgtgctggcccagccgcgtccctactaccgc
tgggacagcggggcggcccccgaccgctggctggcggcggtgcaggtctgggaggtgaag
tgcggggacctctccatctcccccgtctatagggcagccgtggggctggtggatgaggag
aagggcatctcgctgcgcttcccccggttccttcgcgtgagggaggacaagaagcccgag
gaggccaccagcagcacccaggtggccgagctgtacaagaagcagcagcagatccagaac
cagcagcaggcagagaaaggggaggacgaggagttttactga
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