Aythya fuligula (tufted duck): 116501920
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Entry
116501920 CDS
T07966
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116501920 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aful03400
]
116501920 (LIG4)
Enzymes [BR:
aful01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116501920 (LIG4)
DNA repair and recombination proteins [BR:
aful03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116501920 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
116501920
NCBI-ProteinID:
XP_032063457
UniProt:
A0A6J3ENJ3
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All DBs
Position
1:146873748..146877628
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AA seq
909 aa
AA seq
DB search
MASPQPPPRRTVASHVPFADLCATLERMQACKTRPEKTKYFKDFLDSWRKFHHALHQKEK
DVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPAGS
RGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAARNKGQLKKSLLQLITQS
TALEQKWLIRMIIKDLKLGISQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPTVSLSDV
SITLFSAFKPMLAAIADVQQIEKQMNNQTFYIETKLDGERIQMHKDGDVYKYFSRNGFDY
TQQFGASPLDGSLTPFIHSVFKDNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVEDS
DLQTCFCVFDVLMVNDQKLGHEALSKRYEILSNVFTPVTGRIHVVHKKTARTRKEVIDAL
NEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGLRGG
MMSHFLCAIAETPAPNEKPTVFHSICRIGSGYTMKELHDLGLKLAKHWKPYHRRDPPCNI
LCGIEKPEVYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTLDM
LADLRSRAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKVIGIAEQFKAPDLSNVNKVSNV
FEDVEFCVMTGTGKHSKSELESRIAECGGSVVQNPGPDTYCVIAGAENVRVKNIIASNKY
DVVKAEWLLQCFQSKMLVPWQPAVMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLKEVF
SRMKDNKIMPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVSEPRTKIHGTRLSIRA
LELRFYGAKVVSCLEEGVSHVIIGEDHSRVGEMKALRRTFGKKFKIVSELWVTESVKEGV
PKNENQYLI
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccgcagccgccccctcgccggacggtcgcctcgcacgttcccttcgccgac
ctgtgcgccaccctggagcggatgcaggcctgcaagacccggccggagaaaaccaagtac
ttcaaggacttcctggactcgtggagaaagttccaccacgctcttcaccagaaggagaag
gatgtcaccgattcgttttatccggccatgcggctcattctcccgcagctggagagggag
aggatggcgtacgggattaaggaaaccatgctcgccaagctgtacatcgagctgctcaat
ttgcccaaagatgggaaggatgctgcaaagcttttaaactacaggacgcctgccggttca
cgtggggatgctggagactttgccatgattgcatactttgtcttaaaacctaggagcccc
aaaagaggcaggctgacagtggaacaggtcaacgaactgttagatgccatagctaacaat
aatgctgctagaaacaaggggcagttaaagaaaagccttcttcagttaattacccagagc
acagcgcttgagcaaaagtggctcatccggatgattataaaggatctaaaactgggtatc
agtcagcaaactatattttccatttttcatcccgatgctgttgaattacacaatgtcacg
acagatttggaaaaagtttgtagacaactgcatgatcccactgtctcacttagcgatgtt
tctatcacgttattttctgcctttaagccgatgcttgctgctattgccgatgtccagcaa
attgagaaacaaatgaataaccagacattctacatagaaactaaactggatggtgaacgt
atacagatgcacaaagatggtgatgtgtataaatatttttccagaaatgggtttgactat
actcagcagtttggtgcttccccccttgatggctcattaacaccatttattcatagtgta
tttaaagacaacatacaaaattgcattcttgatggtgaaatgatggcttacaatcctgag
acacaaaccttcatgcagaaaggaaacaaatttgacataaaacgaatggtggaggactct
gatctgcagacctgcttctgtgtgtttgatgtgctgatggttaatgatcagaagttgggt
catgaagcactgagcaaaaggtacgagatcttaagcaatgtatttaccccagtaacaggc
aggatacatgtcgtacataaaaaaactgccagaacgagaaaagaagtaattgatgcttta
aatgaagcaatcgataacagagaggaagggattatggtcaaagatcccatgtccacctac
aagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatacgtcaatgggctg
atggacgagctcgaccttctgatcgttggtggttactggggaaagggcttacgtggtgga
atgatgtctcattttctgtgtgcgattgcagagactcccgctccaaacgaaaaacctact
gttttccactctatttgtcgcattggctctggctacactatgaaggaattgcatgatctg
ggtttgaaactggctaaacactggaagccctaccataggagggaccctccctgtaacatt
ttgtgtggcattgaaaaacctgaagtgtacattgaaccttgtaactccgtcatcgttcag
gtcaaggcagctgagattgttaacagcgatatgtacaaaactgactgtaccttgagattc
ccccgaattgagaaaataagagaggacaaagaatggtatgaatgcatgactttggacatg
ctcgcagatctcagaagtagagcagaagggaagctggcgtccaagcaccttcatattgac
gaatatgatgagccgcaagagaagaaaaggaaaactgtatcgaaggtgaagaaggtaatc
ggaatagccgagcaattcaaagctcctgatctttctaatgtaaacaaggtttcaaatgtg
tttgaagatgtagagttttgtgttatgacaggtacaggaaaacactccaaatctgaactg
gaaagccgaatagccgaatgtggtgggagtgtggtacagaaccctggaccggacacttac
tgtgtcatcgcaggagctgagaacgtcagagtgaaaaacatcattgcttccaacaaatac
gatgtggtgaaggcagagtggcttttgcagtgttttcagtccaaaatgcttgtgccttgg
cagccagccgttatgattcacatgtctcctgacactaaagaacattttgctcgtgagtat
gattgctatggagacagctacacagcagatacagatgttgcacaactcaaggaagtattc
tcaagaatgaaggataataaaataatgcccttggacgtgattgctgagttagaagaacgt
tactcatggaacagctgtcaactcagtatattcagaggaaacactatttatgtggactgt
tatgctgttgtcagtgaacccagaaccaaaatccacggaacaagactatcaattagagct
ttggagctccgtttttatggggcaaaagtagtctcttgccttgaagaaggtgtctcccat
gtcattataggtgaagatcattctcgggtaggagagatgaaagcactcaggagaacattt
gggaaaaaatttaagattgtatctgagctgtgggtaacagagtcggtgaaggaaggagtc
ccaaagaatgaaaatcagtacttgatttaa
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