Aequoribacter fuscus: EYZ66_06050
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Entry
EYZ66_06050 CDS
T07243
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afus
Aequoribacter fuscus
Pathway
afus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EYZ66_06050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afus03400
]
EYZ66_06050
Enzymes [BR:
afus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EYZ66_06050
DNA repair and recombination proteins [BR:
afus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EYZ66_06050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHJ87888
UniProt:
F3L526
LinkDB
All DBs
Position
complement(1351851..1355303)
Genome browser
AA seq
1150 aa
AA seq
DB search
MFKHLISSSPWPDKASTRTAVGPFYGSAEARCVAELASHHERIVVFVSDTSNAIALEREL
PFFLTQETELLSFPDWEILPYDHFSPHQDIVSERLRTLYRLPKMARGILIVPVSTAMHRL
PPIDYIASNALQLGIGDEFDAVAFRQQLLNAGYVAVDTVYEHGEFALRGSILDVFPMGSS
VPYRIDTFDADVDTIRTFDPETQRTIEAIERIDLLPAREFPLTKGALNQFMMNWYEAFDV
DHDACPIYREVLAGRVPGGTEYFLPLFFKQTASLFDFLPEGTALVTVGDHHQSSQRFWQD
VVERHEEYGIDPRRPLLPPQRIILPVDEFYGQIKRFATLELRRNPDAPVHFNTDSKPLPS
FISEASTSPVEPLKRWIETHCAGTLLVAETAGRREALIDALQRIGLQAEYFEDWQSFEAN
PVTLGIATAPIDRGMYFGPDAPCLVAEAQLYGQKVAQRRRRSDTQHSTDEAFRHINELHE
GTPVVHLEHGVGRYEGLQTLSVAGETNEFITLIYAEGAKLYVPVASLHLISRYAGADGDS
APLHRLGSDQWEKARKKASERASDVAAQLLEVYARREARKGFAHELDPLDYERFCSGFPF
EETPDQALAIEAVRNDMCAQKVMDRLVCGDVGFGKTEVAMRAAFIASHNSKQVAVLVPTT
LLAQQHYHSFCDRFAGWDVKVAVVSRFNSASQNKAIMADLASGKIDILVGTHKLLSPDVK
FADLGLLIIDEEHRFGVKQKETLKALRTEVDILTLTATPIPRTLNMALGGMRDLSVIATP
PAKRLSIKTFVREHNTSMIKEAILRETLRGGQVYYLHNEVKTIEETARKLQAMVPDLKVA
VAHGQQHETELERIMSDFYHQRFHILVCTTIIETGIDVPNANTIIMDRADRLGLAQLHQL
RGRVGRSHHQAYAYLLCPPRSGLTKDAEKRLEAIEAAGDLGAGYLLATQDLEIRGAGELL
GDDQSGQIHSVGFSLYLKMLERAVAALKRGELPNVDTPLEQGSEVNLHSSALIPEDYLPD
INTRLVLYRRVGAAQTQQQLRDLQVEMIDRFGLLPEPVKTLFISAEVRIEAEQAGISSVD
VGETSGSLQFMDNTKVDPLNLVTMVQKDPKRYQLAGANKLKFQCELTSPRDRADFIITLC
KQLTQTRAAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaacacttaatttcgtcttcgccctggcccgacaaagccagtacccgcacggct
gttgggccattttatggtagcgccgaagcgcgttgcgtggcagagcttgcctcccaccat
gaacgcattgtggtgtttgtgtccgacaccagtaatgcgattgcactggaacgcgaactc
cccttctttttaacccaggaaaccgagttgctgagttttcctgactgggaaatactgccc
tacgaccacttctcaccgcaccaagatatcgtatcggagcgcctgcgcacgctgtatcgc
ctacccaaaatggcgcgcggtattttgatcgtaccggtctccactgcgatgcaccggctc
ccgcccatcgactacatcgccagcaatgcgttgcagctcggcattggtgatgagtttgat
gctgttgccttcaggcaacagctgctcaacgcgggctacgtagccgtcgacacggtctac
gaacacggtgagttcgccctgcgcggttccattttagacgtatttccaatgggcagttcc
gtgccttatcgcatcgacacctttgacgccgacgtcgacaccatccgaacctttgaccca
gaaacacagcgcaccatcgaagccatcgaacgcatcgacttattgcccgcgcgcgagttc
cctctgaccaaaggcgcgctaaaccagtttatgatgaactggtacgaggccttcgacgtc
gaccacgacgcgtgtcctatttatcgagaggtactcgccgggcgagtaccgggtggcacc
gagtattttttaccactgtttttcaaacaaactgccagcttatttgacttcttgcccgag
ggcacagcattggtgaccgtcggggaccaccaccaatcgagtcaacgattctggcaagat
gttgtggagcgccacgaagaatacggcatcgatccgcgtcgacccttactgccgccgcaa
aggattattctaccggtggatgaattctatggtcagattaagcgctttgcgaccctcgaa
ctcagacgcaaccccgacgcaccggtgcacttcaacaccgactcaaaacctttgcccagc
ttcatctccgaggccagcacctcacccgtcgaaccgttaaagcgctggattgagacacat
tgcgccggcaccttactggtggcagaaacggcaggcagacgagaagcgctcatcgatgca
ctgcagcgaattggactccaagcagagtactttgaagactggcagagttttgaggcaaac
ccggtcacactgggtattgccacggccccaatcgatcgcggcatgtattttggccccgat
gcgccctgtttagtcgctgaagcccagctgtatgggcaaaaggtggcgcaacgccgacgt
cgcagcgatacgcaacacagcaccgacgaggcctttcgtcatattaacgagctccatgaa
ggtacacccgtagtacacttggaacatggcgtcgggcgctacgaaggcctgcaaacgcta
tcagtagccggcgagaccaacgaattcattaccttaatttacgccgagggcgcaaaactc
tatgttccggttgcctcgctccacctaatctcacgctacgcaggtgccgacggtgactca
gcaccccttcacaggctgggttccgatcaatgggaaaaagcccgtaaaaaagccagtgag
cgcgcctctgacgtcgcagctcaattgcttgaagtctacgcaagacgcgaggcccgcaag
gggttcgcgcatgagcttgaccccctagactacgaacgcttctgctctggcttccccttt
gaagaaacaccagaccaagcgctggctattgaggcggttcgaaacgacatgtgcgcacaa
aaagtcatggaccgactggtctgcggcgacgtgggcttcggcaaaaccgaggtggcaatg
cgagcggcgtttatcgcgagccacaacagcaagcaagttgctgtgcttgtgccgacgacc
ttgcttgcacagcagcactaccattcgttttgcgaccgttttgccggttgggatgtcaaa
gtcgcggtggtctcacgcttcaatagcgccagtcaaaacaaagccatcatggcggacctc
gcgtccggcaaaatcgacattttggtaggcacgcataaattactgtcgcccgacgtgaag
ttcgcagacctcggtcttctgattattgacgaagagcaccgattcggcgtgaagcaaaaa
gagacattaaaagcacttcgaacagaggtcgacattctgactctgacggccactcctatc
ccaagaacgctaaacatggctctaggtggcatgcgcgacttatcggtcattgccacgccc
cccgccaagcgcttgtcgattaaaaccttcgtgcgcgagcacaacaccagcatgatcaaa
gaggccatcctgcgtgaaaccttgcgtggcggccaggtgtattacctgcataacgaggtc
aaaacgatcgaagagacggcccgcaaactgcaagccatggtacccgacctgaaggttgct
gtcgcacatggccagcagcacgagacggaacttgagcgcatcatgtcggacttttatcac
cagcgttttcacattctggtgtgcacgaccattatcgagactggcatcgacgtccccaac
gccaacacgattattatggatcgcgcggatcgattgggcttggcgcagttacaccagctg
cgtggccgcgtcggacgatcgcatcaccaagcctatgcttacctattgtgcccgcctcgc
tcagggttgaccaaagacgccgaaaaacgtcttgaagccatcgaggctgctggcgacttg
ggcgcaggctatttactggcaacgcaagatcttgaaatccgtggcgccggcgaattattg
ggcgacgatcagtccggacaaatacacagtgtgggcttctctctgtatctaaaaatgcta
gagcgcgccgtcgctgcactcaaacgcggcgaactcccgaacgtcgacaccccgcttgaa
caagggtccgaggtcaatctccacagctcggcgctcatacccgaagactatctgcccgat
atcaatacacgccttgttctctatcgacgtgtaggtgctgctcaaacacagcaacaattg
cgtgatttgcaagttgaaatgatcgaccgctttggattactgcccgaaccggtcaaaaca
ctcttcatcagtgccgaggttcggatcgaagccgagcaagcgggtattagcagcgttgac
gttggggaaaccagcggcagtttgcagtttatggacaacaccaaagtggacccactcaat
cttgtgacgatggtgcaaaaagaccctaaacgctatcagctcgcgggcgccaataaattg
aagttccagtgcgaattaacatcgccaagagaccgcgcagactttattattacgctatgc
aaacagctgacccaaacgcgagccgcagcctag
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