Alicyclobacillus ferrooxydans: JZ786_02545
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Entry
JZ786_02545 CDS
T07322
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afx
Alicyclobacillus ferrooxydans
Pathway
afx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JZ786_02545 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afx03400
]
JZ786_02545 (mfd)
Enzymes [BR:
afx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JZ786_02545 (mfd)
DNA repair and recombination proteins [BR:
afx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JZ786_02545 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSO49643
UniProt:
A0A9X7W4H4
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All DBs
Position
579274..582801
Genome browser
AA seq
1175 aa
AA seq
DB search
MSDGELRRAMTSLRSGGHSGLVTGLSGSARHLYYAATHRMRKSQNPGGITLVVTHSASEA
QQVAEDLQEFLPDEKIFVYPERELAIADVMAYSRDVTSERLQVLEYLSRPHEGGIVVATI
NSVVQPVMKRQMFKGLIRAYALGDAVSLDKEIEWMVKAGYERVDLVENWGQFSVRGGILD
VYPLTSSHPIRIELFDTEVDSIRAFDAATQRSLDKRKTAQIGPAFDFLIPAARMEAVAEK
LSEHLENRVRTVTDLEVRDKLQSVIGSDIRRFASGMPFFGQLRYTELLKDQVDTLMDYIP
VNGLLILGEPTRLLERQRGIEKEVREWISTALLRGELIAGALSEPAFQILWDHKGYAAVE
FTVFARAAGASRYAFVINVTAKSMQQFHGQMNVLKTEMQRWAHSQTRVVLLAATDERQDR
LERVLADYRMESTRGAVPEQGGIPVLRVGTLSSGFELPMARLAVILDTEIFSSQKKGRRV
RAEMSDAERIRSYQELNVGDYVVHVNHGIGKYLGIRTLEVDGRHKDYLHLQYAGADSLYV
PVEQIDQVQRYIGSDDKEPKVYHLGGNEWNRVKQKVSKSVRDIAEDLVKLYAARQATPGF
AYSEDTPWQKDFEAMFPYEETPDQVRAIDEIKKDMEQSRPMDRLLCGDVGYGKTEVALRG
AFKAVMDGKQVAVLVPTTILAHQHYETFKERFAGFPVTVEVLSRFKSRKESTSIVKGLKD
GSIDVVIGTHRLLNKSIQFKDLGLLIVDEEQRFGVTHKERVKQMRTNVDCLTLTATPIPR
TLHMSLLGVRDLSVIETPPENRFPVQTYVVEYNEGLIREALERELNRGGQVYYLYNQVQS
IRSMADRLAKLVPDARIAVAHGQMPEEELERVMLDFLEGEIDVLVTTTIIETGLDIPNVN
TLLVHDADRLGLAQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGS
GFKIAMRDLAIRGAGNLLGAEQHGFIHSVGFDLYNDMLADAVKEIRGEQEKAAPEPSIDL
ALEAYLPDDFISNPAQKIAMYKKLKFVRSPEAAADVEEEIEDRYGEMPEPVLNLLDVTRM
KSYAMRYGIETIANHGAETVIRVRASETSNLNHGVLFGIVLQHKGEYRKRTDGTVQISFR
TKALSDRDLCRMLVRFLEAFADALNTKQGVEQLAK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatggagagttgcggcgggcgatgacctccctgcgcagcgggggacacagcggg
ttagtcacagggctcagcggcagtgcaagacatctgtactatgcagccacacacaggatg
cgaaagtcacagaaccctggcggcattacacttgtggtaacgcattctgcaagtgaagcg
cagcaagttgcagaggacctacaggaatttcttccggacgaaaaaatatttgtctatccg
gaacgtgagttggccattgcggacgtgatggcctatagtcgcgatgttacatcggagcgg
ttacaggtccttgaatacctgtctcgcccgcatgagggcggcattgtggtcgcaaccatc
aattcggttgtacaaccggtcatgaagcggcaaatgttcaaaggactgattcgagcgtat
gctcttggcgatgcagtgtctctggacaaagagattgaatggatggtaaaggcgggatac
gaacgtgtcgatctcgttgagaactggggacagttctctgttcgcggcggcattctcgac
gtctatccactcacgtcttcgcaccccattcggattgaattgtttgataccgaagtggat
tcgattcgtgcctttgatgcagctacgcagcggtcgctcgataaacgaaaaacagcccaa
attggtccagcgtttgactttctcattcctgcggcgcggatggaagctgttgcagagaag
ttgtctgaacacctcgagaaccgtgtccgcacggtaaccgacctcgaagtcagagacaag
ttgcaaagcgtcattggctcagatatccgaagattcgcatcaggaatgccgttctttggt
caattgcgttatacggaattattgaaagaccaagtggacaccttgatggactacattcca
gtcaacggattgttgattctgggtgaaccgacgcggctccttgagcggcagcgcggtatc
gaaaaagaagtgcgggaatggatttccacagcccttttgcgcggtgaactgattgcgggg
gcactctcggaaccagcgttccaaattctttgggatcacaagggttacgcagcggttgag
ttcaccgtgtttgcccgtgctgcaggtgcgagccggtatgcattcgtcatcaacgtaacg
gccaagtcgatgcagcaatttcacggtcagatgaacgtgctcaaaacggagatgcaacgg
tgggcacatagccagacccgggtcgttttgctggcagcgactgacgaacggcaagaccgg
ttagagcgcgtcctcgcggattatcgcatggagtcgacgcgaggagccgtccctgaacag
gggggcattcctgttttgcgcgtcggcacactgagttcagggtttgagctgccgatggcg
agactcgcagtgatcctcgatacagaaattttttcctcacagaaaaagggccgtcgcgtt
cgcgccgagatgtcggatgccgagagaatccgcagttatcaggagttgaatgtcggcgac
tacgtcgtccacgtgaaccatggtatcggcaaatacctcggtatccgcacgctcgaagta
gatggtcggcataaggactatctacacctccaatacgccggcgcggatagtctctacgtc
cctgtagagcagatcgatcaggtgcagcgatacatcggatcggatgataaggaaccaaag
gtctatcatctcggcggcaacgagtggaacagggtcaagcagaaggtctccaagtcggtg
cgggacattgcagaggacctcgtcaagctgtacgcagcgagacaagctacgcctgggttc
gcgtactcggaggacacgccctggcagaaggactttgaggccatgttcccctacgaagag
acccctgaccaggttcgggctatcgatgaaatcaagaaggatatggaacaatcccggcca
atggatcgcctgctttgcggtgatgtcggttacggtaaaactgaggtcgcgttgcgggga
gctttcaaggccgttatggatggaaaacaagtcgcggttctggtcccaaccaccattttg
gcgcatcaacactatgaaacctttaaggaacggtttgcaggttttccggtcacggtagag
gtgctaagtagatttaaaagccgcaaggagtctacttcgattgtaaaagggttgaaagac
ggcagcatcgatgtggtgattggcacacaccgactgctgaacaagtctattcaatttaaa
gacctcggactgttaattgtcgacgaagaacagcggtttggggttacccacaaggaacgt
gtcaaacagatgcggaccaatgtggactgcctcactctgacagcgacgccgattcctcgg
acactgcacatgtcacttcttggtgtgcgcgatttgtccgtcatcgagacgcctcccgaa
aaccggtttccggtgcagacgtacgtggtggagtacaacgagggcctgattcgtgaagcc
cttgagagagaactcaaccggggtggacaggtctactatctctacaaccaggtacagagc
attcggtcgatggcagaccgtctggcgaaactggttcccgatgcaaggattgccgtagcg
catggccaaatgccagaagaggaacttgagcgtgtgatgcttgattttctcgaaggggag
atagacgtcctggtcacgaccaccatcattgaaactgggctcgacattccaaacgtaaat
acgcttctcgtccatgacgcagacaggcttggactcgcgcagttgtaccaactccgagga
cgtgtcggccgctcgaaccgaatcgcctacgcttatttcacataccagcgagacaaggtc
cttacagaagtggcggaaaagcgtctgcaggctatcaaggagttcacggaacttggcagc
ggctttaaaattgccatgcgcgatctcgctatccgtggcgcgggaaatctgctcggagcc
gaacagcacggttttattcactcggtcggttttgacctgtacaacgatatgctcgccgat
gcagtgaaagagatcaggggcgaacaagagaaagcagcacctgaacctagcatcgatctg
gcccttgaagcgtatcttccggacgactttatttccaatcctgcacaaaaaatcgcgatg
tacaagaaactcaagtttgtgcgcagtccagaggctgctgccgatgtggaagaggagatt
gaagaccggtacggcgagatgccggaacccgttttgaacctgctcgacgtcacgcgcatg
aagagctatgcaatgcgctatggaatcgagaccattgccaatcatggtgcagaaaccgtg
attcgggtacgggcctcagagacgtcaaacctgaatcacggcgtgctcttcggtatcgtg
ctgcaacacaagggagaatacagaaagcgcacggatggaaccgtgcaaatcagctttcgg
acgaaagctctttccgaccgcgacctctgtcgcatgctggttcgcttcctggaggccttt
gcagacgcgctaaacacaaaacaaggggttgaacagcttgcgaagtaa
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