Acidihalobacter ferrooxydans: BW247_08900
Help
Entry
BW247_08900 CDS
T09791
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afy
Acidihalobacter ferrooxydans
Pathway
afy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW247_08900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afy03400
]
BW247_08900
Enzymes [BR:
afy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BW247_08900
DNA repair and recombination proteins [BR:
afy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BW247_08900
BRITE hierarchy
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APZ43194
UniProt:
A0A1P8UHD7
LinkDB
All DBs
Position
complement(1872318..1875791)
Genome browser
AA seq
1157 aa
AA seq
DB search
MPQTKQIATPSSPLSTPRPAAARRATLTRLTGAALGLAAADAVQAHGGPALLLAADTQAA
WQLEQALRFFGGDTLPVLHLEDWETLPYDVFSPHDDIVSQRLDVLNRLPGLTRGVLVAPV
TTVLHRLAPPEYIRGHSLKLMRGQRLDIEAFRRDLEAAGYRAVTLVMSHGEFAVRGELID
LYPMGRRTPIRIDLFDDEIESLRDFDPETQRSGETIERVELMPGHEFPLNEAGIKDFRRR
YRERFEGDPQASQIYRAVSEGQPPGGIEYYLPLFFERTATLFDYLDGDTLVILTDGVQAA
AEAFLQQIEHRYEQLRHDRERPLLPPSGPFLTADELAAALDSRTTLRLLSRQGDEDAGEQ
EADATVLPPLRLQPRAEHPATALHGFLEAHPDRVLFAAESAGRREALGDTLRGLNLRPRT
VESWAEFLTADERLCLAIAPLPAGVRLPGAEISIVTEGELLGERAQQRRRQRRPTRDADA
VIRNLTDLAIGAPVVHEDHGVGRYHGLIKLDIAGSGNEAEFLAIEYANKDRLYVPVASLH
LISRYTGASESEAPLHKLGGDQWQRQRKRAAEKASDAAAELLEINARRAARQGHAFAIDG
DEYAAFAAAFPFEETPDQQTAIDAVLADLAAPTPMDRVICGDVGFGKTEVAMRAAFAVVH
NGHQVAVLVPTTLLAEQHLTNFRDRFADWPVRIESLSRFRSKAEQTATLKALREGALDIV
IGTHKLLAPEIRFKRLGLAIIDEEHRFGVRHKERLKQLRAEVDLLTLTATPIPRTLNMSL
SGLRDLSIIATPPPRRHQIKTFVHEWNANMLIEACARELGRGGQIYFLHNEVKTIERAVR
DLQKLLPNARIGMAHGQMRERELEQVMLDFYHRRHDVLVATTIIESGIDVPNANTIIIDR
ADKLGLAQLHQLRGRVGRSHHRAYAYLITPPRKAMTPDAVKRIEAIETLGDLGVGFSLAT
HDLEIRGAGELLGEDQSGQIQEIGFTLYNELLERAVAALKAGKLPELERPLEHGTEVDLG
VGALLPDDYVNDVHGRLILYKRIASAADEHALRELQVELIDRFGLLPQPAKNLFAITGLK
LKLTPLGVRKLDMSAHGARLIFSEQTPVDPGKLILLLQSNPKRYKLDGPFKLKLSVEMPE
LEDRLKIIDELIARLGG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaaacgaagcaaatcgctactccgtcgtcgccgttgtccaccccgcgccccgcc
gccgcccgccgtgccaccctgacccgtctgaccggcgccgcactcgggctcgccgcggcc
gatgccgtgcaagcgcacggcggacctgctctgctgcttgccgccgacacacaggccgcc
tggcagctcgaacaggcgttgcgcttcttcggcggcgacacgctccccgtgctgcatctg
gaagactgggaaaccctgccctacgacgttttttccccgcatgacgacatcgtctcgcag
cggcttgacgtactcaaccgcctgccgggactgacgcgcggcgtactggtcgcaccggtc
accaccgtactgcaccgcctcgcaccgccggaatatatccgcggccacagcctgaaattg
atgcgcggccagcgccttgatatcgaagcgttccgccgcgatctggaagccgcaggctac
cgcgccgtcaccctggtcatgagccacggcgagttcgccgtgcgcggcgagctgatcgac
ctctacccgatgggccggcgcacaccgatccgcatcgacctgttcgacgacgaaatcgag
tccctgcgcgatttcgaccccgagacgcagcgttccggggagaccatcgagcgcgtcgag
ctcatgcccggccacgaattcccgctgaacgaagcgggtatcaaggacttccgccgccgc
taccgcgagcgtttcgagggcgatccgcaggccagccagatttaccgcgcagtcagcgag
ggccaaccgccaggcggcatcgaatactacctgcccctgttcttcgagcgcacagcaacg
ctgttcgactatctggacggcgacacgctcgtcatcctcaccgacggcgtgcaggcggca
gccgaagcgtttttacagcagatcgagcaccgctacgaacaactgcgccatgaccgcgag
cgcccgctgctgccgccgtccggcccgtttctcacggccgacgaactcgccgccgcgctg
gacagccgcaccacgctgcgcctgctctcgcgtcagggcgacgaagacgccggcgagcag
gaagcagatgccaccgtgctgccgccgctgcgcctgcaaccgcgcgccgagcatcccgcc
accgccctgcatggtttcctcgaagcccatcccgaccgtgtgctgttcgccgccgaatcg
gccggtcgccgcgaagcgctgggcgacacgctgcgcggcctgaatctgcgcccgcgcacg
gtcgagagctgggccgaattcctcaccgccgacgagcgcctgtgtctggccatcgcgccg
ctgccggctggcgtgcgcctgccgggcgcggaaatttccatcgtcaccgagggcgaactg
ctcggcgaacgcgctcagcaacgccgccgccagcgccgccccacgcgcgatgccgacgcg
gtcatccgcaacctcaccgatctggccatcggcgcgccggtcgtgcacgaggatcacggc
gtcggtcgctaccacggcctgatcaagctcgatatcgccggcagtggtaacgaggccgaa
ttcctcgccatcgaatacgcaaacaaagaccgcctctacgtccccgtcgcctcgctgcac
ctcatcagccgctataccggcgccagcgagagcgaagccccgctgcataaactcggcggc
gaccagtggcagcgccagcgcaaacgcgccgccgaaaaggcctccgacgccgccgccgaa
ctgctggaaatcaacgcccgccgcgccgcgcgccagggccacgccttcgccatcgacggc
gacgagtacgcagccttcgccgccgcctttcccttcgaggaaacgcccgaccaacagacc
gctatcgacgccgtgctcgccgatctggccgcgcccaccccaatggatcgcgtcatctgc
ggcgacgtgggcttcggcaagaccgaggtcgccatgcgcgccgccttcgccgtggtgcac
aacggccatcaggtcgccgtgctggtgccgaccaccctgctcgccgaacagcacctgacc
aactttcgtgatcgcttcgccgactggccggtgcgcatcgagtcgctgtcgcgctttcgc
agcaaggccgagcagaccgccacactcaaggccctgcgcgagggcgcgctggacatcgtc
atcggcacgcacaaactgcttgccccggaaatccgcttcaagcgcctggggctggccatc
atcgacgaagaacaccgcttcggcgtgcgccacaaggagcgcctcaaacagctgcgcgcc
gaagtcgatctgctgaccctgaccgcgacgccgattccgcgcacgctcaatatgtcgctg
tccgggctgcgcgatctgtcgatcatcgccacgccgccaccgcgccgccatcagatcaag
accttcgtacacgaatggaacgcgaacatgctcatcgaagcctgtgcgcgcgaactcggc
cgcggcgggcaaatctattttctgcacaacgaagtcaaaaccatcgagcgcgccgtgcgc
gatctgcaaaaactgctgcccaacgcgcgcatcggcatggcgcacgggcagatgcgcgag
cgcgaactcgaacaggtgatgctcgacttctaccaccgccgccacgacgtactggtcgcc
accaccatcatcgaaagcggcatcgacgtgcccaacgccaacaccatcatcatcgaccgc
gccgacaaactcggcctcgcccagctgcatcagctgcgcggtcgcgtcggccgctcgcac
caccgcgcctatgcctacctcatcaccccgccgcgcaaggccatgacgcccgacgcggtc
aaacggatcgaggccatcgaaacgctcggcgatctcggcgtcggcttcagcctggcgacc
cacgatctcgaaatccgcggtgccggcgaactgctcggagaagaccagagcggccagatt
caggaaatcggtttcacgctctacaacgaactgctcgaacgcgccgtcgccgcgctcaag
gcgggcaagctgcccgagctggaacgtccgctggaacacggcaccgaggtcgatctgggc
gtcggcgcgctgctgcccgatgactacgtcaacgatgtccacggccgcctgatcctctac
aaacgcatcgccagcgccgccgacgaacacgccctgcgtgaactccaggtcgagctgatc
gaccgctttggactgttgccgcaaccggccaaaaacctgttcgccatcaccggactcaag
ctcaaactcacaccgctcggcgtgcgcaaactggacatgagcgcccacggcgcgcggctg
attttctcggaacagacgccggtcgaccccggcaagctgattctgctgctacagtccaac
cccaagcgctacaagctggacggaccgttcaagctcaaactgagcgtcgaaatgccggaa
ctggaagaccggctcaaaatcatcgacgaactgatcgccaggctcggcggttga
DBGET
integrated database retrieval system
