Antechinus flavipes (yellow-footed antechinus): 127545177
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Entry
127545177 CDS
T08818
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013
Nucleocytoplasmic transport
afz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127545177
03015 mRNA surveillance pathway
127545177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127545177
Enzymes [BR:
afz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127545177
5.6.2.5 RNA 5'-3' helicase
127545177
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127545177
mRNA cycle factors
Common to processing body (P body) and stress granule
127545177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127545177
NCBI-ProteinID:
XP_051828243
LinkDB
All DBs
Position
1:complement(674477772..674536412)
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AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGGGAGG
PGAAGVGGAAGQLDAQVNGPDGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPV
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGD
EICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISTGPSHVTAMNIPIPFNLVMXPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGIPGTSQANLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatgggcccagctcgcagacgctcaccttcttggacacggaggag
gccgagctgctgggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagacgccccctggggggcccggaggcggcggcggcggcgcgggcggg
cccggagccgcgggcgtcgggggtgccgcgggccagctcgacgcgcaggttaatggacct
gatggtatcctgcagaatggtgctgtggatgacagtgtagctaaaactagccaactgttg
gctgaattgaattttgaagaagatgaagaagatacttactatacaaaggatcttcctgtg
catgcttgcagttactgtggcatccatgatccggcttgcgtggtttactgcaatactagc
aagaaatggttttgtaatggacgtggaaacacttctggcagccacattgtaaatcatctt
gtaagagcaaaatgcaaagaagtaactctccacaaggatggccccttgggggagaccgtg
ctggagtgttacaattgtgggtgtcggaatgtgtttctccttggcttcatacctgccaaa
gctgattcagtagtggtactcctctgcaggcaaccctgtgccagtcagagcagcttaaag
gatatcaattgggacagctcccaatggcagcctctgatccaggatcgctgctttctttcc
tggctggtaaagattccttctgaacaggagcagctaagagcacggcagattacagcgcaa
caaatcaacaaactagaggaactctggaaggaaaatccttcagcaactcttgaagatctg
gaaaagccaggtgttgatgaagagccccagcatgtcttgcttcgctatgaggatgcttat
cagtatcaaaatatctttggtccacttgtcaaactggaagcagattatgataagaaactt
aaagaatcccagacccaagataacatcacagtcagatgggacctgggcctcaacaagaag
agaatcgcttacttcacgttgcccaagactgactctgatatgcgtcttatgcagggagat
gaaatctgccttcgctataaaggtgacctcgccccattgtggaagggaattggccatgtc
attaaagttccagataattatggagatgaaattgcaattgaattgaggagtagtgttgga
gcccctgtagaagttactcataacttccaagtggattttgtatggaagtccacttcattt
gacaggatgcagagtgcattaaaaacatttgctgtggatgaaacctcagtctctggctac
atttaccacaaactgttgggtcatgaagtagaggatgtgattattaaatgccagctgcca
aaacgttttacagcacaaggactccctgacctcaatcattctcaggtatatgcagtaaag
actgttttgcaacgacctttgagcctcatccagggaccacctggtacaggaaagactgtc
acatcagctacaattgtctaccatttggctagacaaggcaatgggcctgtgctagtttgt
gctccaagcaatatagctgtggatcagttgactgagaagattcatcagactggactgaaa
gttgttcgtctttgtgctaaaagccgggaagcaattgattctcctgtatcttttttggca
ctgcacaaccagatcaggaatatggatagtatgcctgaactccagaagctacaacagctg
aaagatgaaacaggtgaactttcatctgctgatgaaaagcgttaccgagcattgaaacgc
acagctgagcgagaactgctcatgaatgcagatgtgatctgctgcacgtgtgtgggagca
ggtgatccaaggcttgccaagatgcagttccgatctattttaattgatgaaagcactcag
gctactgaaccagagtgtatggtaccagttgttcttggagccaaacagctgatcctagta
ggagatcattgccagctggggcctgtagtcatgtgcaagaaagctgcaaaagcaggcttg
tctcagtccttatttgagcggctagtggtgttggggatccgtccaatccgcctccaagtc
caatatcggatgcatcctgcccttagtgctttcccatctaacatcttctatgagggttcc
cttcagaatggcgtcactgcagctgatcgtgtgaaaaagggatttgatttccagtggccc
cagccagataaaccaatgttcttttatgtgacccaaggccaagaagaaattgccagttca
ggcacttcttatttgaacagaacggaagcagcaaatgtggaaaagataactacaaagctc
ctaaaagctggtgccaaaccagatcagattggtattattacaccttatgagggtcaacga
tcttatctggtacaatacatgcaatttagtggctctctgcatacaaaactctaccaggaa
gtggaaatagctagtgtcgatgcattccagggacgagaaaaggactttatcatcctttcc
tgtgtgagagccaatgaacaccaaggaattggatttttaaatgatcccaggcgtcttaat
gtggctcttactcgagcaaggtatggagtaattattgtgggcaaccctaaagctctttcc
aagcaaccactctggaaccatctattgaactactacaaggaacagaaagtgctggtagaa
ggacccctaaacaaccttcgggagagcctcatgcaattcagcaagccccgcaaacttgtc
aataccatcaatccaggagcccggttcatgactactgccatgtatgatgcacgtgaagct
attatcccaggatctgtctatgatcggagcagtcaagggcgtccatcgaatatgtatttt
caaactcacgatcagatcgggatgatcagcaccggacccagtcacgtgactgctatgaac
attcctattcctttcaaccttgtgatgnccccaatgccgccgccaggctatttcggccaa
gccaatgggccagctgcaggccgcgggacaccaaaagggaagactggtcgtgggggacgc
caaaaaaatcgctttgggattcctgggactagccaggcgaacctcccaaatagtcaggcc
agccaagatgtggtctctcagcccttctcccagggcccattgactcagggctatatttcc
atgagtcagccatcccagatgagccagccagggctctctcaaccagaattatcccaggac
agttaccttggtgatgagtttaaatcgcagattgatgtggctctgtcacaagactctact
taccaaggagaacgggcataccaacacggtggagtgacagggctgtcacagtattag
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