KEGG   Antechinus flavipes (yellow-footed antechinus): 127556601
Entry
127556601         CDS       T08818                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
afz  Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03030  DNA replication
afz03410  Base excision repair
afz03420  Nucleotide excision repair
afz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127556601
   03410 Base excision repair
    127556601
   03420 Nucleotide excision repair
    127556601
   03430 Mismatch repair
    127556601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afz03032]
    127556601
   03400 DNA repair and recombination proteins [BR:afz03400]
    127556601
Enzymes [BR:afz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127556601
    6.5.1.6  DNA ligase (ATP or NAD+)
     127556601
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     127556601
DNA replication proteins [BR:afz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    127556601
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     127556601
DNA repair and recombination proteins [BR:afz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     127556601
   NER (nucleotide excision repair)
    Other NER factors
     127556601
   MMR (mismatch excision repair)
    Other MMR factors
     127556601
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Other DBs
NCBI-GeneID: 127556601
NCBI-ProteinID: XP_051845806
LinkDB
Position
3:complement(624690102..624698183)
AA seq 955 aa
MQRSIKSFFQPMSGDKVKKQEEPPKSSREREPAPKAALKERNGGESESESPVKRLARRAP
RVLGSEGEEDDEEPEEAAPREEVAAPPPSFPGPQELPTPTLPLPPQEPSGPSAASASRSP
SDTSPSSVSPAGIPKRRTARKQVPKRKLQELPEDPESSEPKRHKGEGGKSGGRSPEQPPP
VPEAEGGEQPPREALGEAAEEAREGEAPARVPKASAGARTKAPKASGKAHAKAPKAPTKA
PVQAPEAPPETPPKAPSAAPKAFSSFFAPRKPAAAKQAPQEAEAGRAAEEASGAAPDPAA
YNPSKSGYHPVDDACWKPGQRVPYLAVARTFEKIEEVSARLRMVEMLSNLLRSVVALSPA
DLLPVLYLSLNQLGPPQQGLELGVGDGVLLKAVAQATGRQLDTIRAEMAERGDVGLVVEA
SRSTQRTMLPLPHLTAAGVLGKLRDIAHLTGSASTSKKIDIIKGLFVACRHSEARFIARA
LSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKSAEARKSWLEEKGLILKQ
TFCEVPDLDLIVPALLKHGLDQLPQHCQLTPGVPLKPMLAHPTRGIGEVLKRFEESAFTC
EYKYDGQRAQIHVLDNGDVKIFSRNQEDNTGRYPDVIRRVPKMKRPSVLSCILDSEAVAW
DRAKKQIQPFQVLSTRKRKEVEESDIQVQVCLYAFDLIYLNGQSLVREPLSRRRQLLREN
FIETEGEFVFATSLDTEDTEQIADFLEQSVKDSCEGLMVKTLETNATYEIAKRSHNWLKL
KKDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAFDEDSEEFQAICKLGTGFSDEEL
EEHYQSLQALVIPAPRSYVRAEGAVPPDHWLEPTTVWEVKCADLSLSPIYSAARGLVESD
KGISLRFPRFVQVRKDKKPEEATSSAQVAGLYKKQQQIQNQQDLEASDFDPEGFY
NT seq 2868 nt   +upstreamnt  +downstreamnt
atgcagcgatccatcaaatcgtttttccagcccatgagtggggacaaagtgaagaagcag
gaggagccccccaaaagcagcagggaacgagagccagcccccaaggctgccctgaaggag
aggaatggcggggagtcggagagcgagtcccccgtgaagcggctggcgaggagggcgccc
cgagtcctgggcagcgaaggcgaggaggatgacgaggagcccgaggaggcggccccccga
gaagaggtagctgcccctccccccagctttccaggcccccaggagctgcccacacccact
ctgcccctccccccgcaggagcccagcggaccctctgcagccagcgccagccgctccccc
tcagacacgtcccccagcagcgtctccccagcggggatccccaagcgccgcacagctcgg
aaacaggtgcccaagcggaagctgcaggagctgcccgaggacccggagagcagtgagccc
aagaggcataagggggagggggggaagagtgggggaaggagcccggagcagcccccaccg
gtccccgaggctgagggcggggagcagcctcccagggaggccttgggggaggccgctgag
gaggccagggaaggagaggcgcccgcccgggtacccaaggcatccgccggggcgcgcacc
aaggcgcccaaggcttccggcaaggcgcacgcgaaggcgcccaaggctcccaccaaggca
cccgtgcaagcaccggaggccccccccgagaccccccccaaggcgcccagcgcggccccc
aaggccttcagcagcttttttgccccccgaaaaccagcagcagcaaaacaggccccgcag
gaggctgaggcggggagggccgcagaggaggcgtccggcgcggccccagacccggccgcc
tacaacccgtctaagagcggctatcaccccgtcgacgacgcctgctggaagccagggcag
agggtcccctacctcgctgtggcgcgaacctttgagaaaatcgaggaagtctctgctcgg
ctccggatggtggagatgctgagcaacctcctgcgctccgtggtcgccctgtcccccgca
gaccttctccccgtcctctacctgagtctgaaccagctgggccccccccagcagggcctg
gagctcggcgtcggggacggcgtcctcctcaaggccgtggctcaagccacagggcggcag
ctggacaccatccgggccgagatggcagaacggggggacgtggggctggtggtggaggcc
agccgcagcacccagcgcaccatgctgcccctgccccacctgacggccgccggcgtgcta
ggcaagctccgggacatcgcccacctcacaggcagcgcctccacatcaaagaagatcgac
atcatcaaaggcttgttcgtggcctgccggcactcggaggcccgcttcatcgccagggcc
ctgagcgggcggctgcgcctgggactcgccgagcagtcggtgctggccgcgctggcccag
gccgtgagcctcacgccccccggccaagagttcccccccgccgtggtggatgctgggaag
ggcaagtcggccgaagccagaaagtcctggctggaggagaaaggactgatcctgaagcag
accttctgcgaggtgcccgacttggacctgatcgtccctgccctgctcaagcacggcctg
gaccagctgccccagcactgccagctgaccccaggggtgcccctgaagcccatgctggcc
caccccacccggggcatcggggaggtgctgaagcgcttcgaggagtcggccttcacgtgc
gaatacaagtacgacgggcagagagcccagatccacgtcctggacaacggggacgtgaag
atattcagccgcaaccaggaggacaacacgggccgatacccggacgtcatcaggcgcgtc
cccaagatgaagcgtccctccgtcctctcctgcatcctggactcggaggccgtggcctgg
gaccgggccaagaagcagattcagcccttccaggtgctcagcacccgaaagcgcaaggaa
gtggaggagtcagacatccaggtccaagtatgtctgtacgccttcgacctcatctacctc
aacgggcagtccctggtgcgggagccgctgtcccggaggcggcagctgctccgagagaac
ttcatcgagacggagggcgagttcgttttcgccacgtctctggacacggaggacacggag
cagatcgccgacttcctggagcagtcagtgaaagattcctgcgagggcctcatggtcaag
acccttgaaaccaacgccacctatgagattgccaagaggtcccacaactggctcaagctg
aagaaggactatctggaaggcgtcggtgacaccctggacctggtggtgatcggggcctat
ctgggccggggaaagcgggccgggcgctacgggggcttcttgctggcggccttcgatgag
gacagtgaagaattccaggccatctgcaagctgggcacgggcttcagcgacgaagaattg
gaggaacattatcagagcctccaggccctcgtgattcctgctcctcgttcctacgtccgg
gctgaaggggccgtaccccccgaccactggctggagccgaccactgtgtgggaggtcaaa
tgtgctgatctctcgctctccccgatctattcagcagcccgaggattggtggagagtgac
aagggcatctccctgcgcttcccccgatttgtccaagttcgaaaagacaagaaaccagaa
gaggcgacttccagtgcccaggtggccggcctgtataagaagcagcaacagattcagaac
cagcaggacttggaggcctccgactttgatcctgaaggtttctattag

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