Agathobaculum sp. NTUH-O15-33: RWV98_06925
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Entry
RWV98_06925 CDS
T09495
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
agat03009
]
RWV98_06925 (rlmD)
Enzymes [BR:
agat01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RWV98_06925 (rlmD)
Ribosome biogenesis [BR:
agat03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RWV98_06925 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_11
TRAM
Methyltransf_15
MTS
Methyltransf_4
Met_10
Methyltransf_12
PCMT
Ubie_methyltran
RrnaAD
NodS
PrmA
Methyltr_RsmB-F
Methyltransf_24
TPMT
Methyltransf_32
UPF0020
RsmJ
Motif
Other DBs
NCBI-ProteinID:
WNX85997
LinkDB
All DBs
Position
1331503..1332870
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AA seq
455 aa
AA seq
DB search
MELVKNKIYRAQIMDYTADGAGVAKVDGVAVFVPRAAVGDQCDIRITKVGKSVAFGRIEE
IVVPSKHRIAPLCPVAAQCGGCCYQHITYEEEKRAKEKKVRDALVRIGGQDGAKLIGIVG
APETAHYRNKAQYPVGLNAAGRVVTGFYRPRSHDIVPVEKCLIQSETADRAAAVVRDWMN
QNQVPPYDYGKKRGTVRHIYVRVGEASGECQLTLISATRKLPALDALVDSLRAALPSLTG
VLLNHNQRDDNVILGDRTDVLWGEPLLEDRLCGHSFLLSPAAFYQVNHAQAEKLYECALD
FAGLTGSETAVELYCGAGTITLSLAERALRVIAVEIVPEAVENARQNAARNGVTNVEFIC
ADAGQAAAMFAGRGETPDVLVVDPPRKGLDEATRDAILRMLPPRVVYVSCDPATLARDVK
ELTNAGYTLEKAQAYDLFPRTSHVECVCLMTRKDK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgtgaaaaataaaatttatcgcgcgcagatcatggattatacggcggatggc
gccggtgtggccaaggtggacggcgtggccgtattcgtgccccgcgccgccgttggcgac
cagtgcgatatccgcatcaccaaggtggggaagagcgtggcgttcggccgcatcgaagag
atcgttgtgccgtccaagcaccgcatcgcgcccctgtgcccggtggccgcgcagtgcggc
ggctgctgctaccagcacatcacctacgaagaggaaaagcgcgccaaggagaaaaaggtg
cgggacgcgcttgtccgcatcggcgggcaggacggcgcgaagctcatcggcatcgtgggc
gcgccggaaaccgcgcactaccggaataaggcccaatacccggtcggcctgaacgcggcg
ggccgggtcgtgaccggcttttaccgcccgcgcagccacgatatcgtgcccgtggaaaaa
tgccttatccagtccgaaacagcagaccgcgccgccgccgtggtgcgcgattggatgaat
caaaatcaggtgccgccctatgattacggaaaaaaacggggcacggtgcgccacatctat
gtccgcgtgggcgaggcgagcggcgaatgccagctaacgctcatctccgccacgcgcaag
ctgcccgcgctcgacgcgctggtcgattcgctgcgggccgcgctgccgtccctcacgggc
gtgctgcttaaccataaccagcgggacgataacgtgatcctcggcgaccgcaccgacgtg
ctctggggcgagccgctgctggaggaccggctgtgcgggcactcgttcctgctttcgccg
gcggcgttttatcaggtcaaccacgcgcaagcggaaaagctgtatgaatgcgccttggat
ttcgccggcctgaccggcagcgagaccgcggtggagctgtactgcggcgcgggcaccatt
acgctgtcgctggccgagcgggctttgcgcgtcatcgcggtcgaaatcgtgcccgaagcg
gtggaaaacgcccggcagaacgccgcgcgaaacggcgttaccaacgtggaatttatttgc
gcggacgcgggacaggccgccgccatgttcgcggggcgcggcgaaacgcccgatgtgctc
gtcgtcgacccgccccggaaagggctggacgaagccacgcgcgacgccatcctgcgcatg
ctcccgccccgcgtcgtctacgtctcctgcgaccccgccaccctcgcccgcgacgtaaaa
gaactcacaaacgccggctacaccctagaaaaagcccaagcctacgacctgtttccgagg
acgagccacgttgagtgcgtttgtttaatgacgagaaaagacaagtaa
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