Anseongella ginsenosidimutans: FRZ59_11550
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Entry
FRZ59_11550 CDS
T06183
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agd
Anseongella ginsenosidimutans
Pathway
agd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRZ59_11550 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agd03400
]
FRZ59_11550 (ligD)
Enzymes [BR:
agd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRZ59_11550 (ligD)
DNA repair and recombination proteins [BR:
agd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRZ59_11550 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEC52907
LinkDB
All DBs
Position
complement(2819617..2822274)
Genome browser
AA seq
885 aa
AA seq
DB search
MSLTTYRKKRSFKDSPEPKPKREGKNARKEDKKLRFVVQRHHASRLHYDFRLEMEGVLKS
WAVPKGPSLNPSDKRLAMMVEDHPYDYKDFEGIIPEGNYGAGVVYKWDEGFYEPLDKSAN
PEKELLKELRSGSLKFLLKGKKLKGEFALVKMKGAEDNSWLLIKHKDKFSTETPYNSEDQ
VPAAIKEKKNNRKKSGASRRPAGEETKRTAARASAADFIKPMLATLIGKPFSREGWLFEN
KWDGYRAIAEVSSGAVRLYSRSGKSFNKDYEPIAGILSEIEHDLVLDGEIVALNKQGKPE
FQLLQNYKKSAKGTLVYYVFDLLEFKGYDLKSMELFQRKELLNELFNSLGELRSAGTKDA
RVQNTEYVINEGEKYFKKILREKGEGLLAKSGSSSYQPGRRSDQWLKIKTHQRQEAIIAG
FTDPRESRKKFGALILAVNENGKLKYIGHTGGGFNQESLNDVYEKMRPLIQDKSPFDKKP
KTNAPVTWLKPELVCEVKFAEWTNGGHMRQPIFIALREDKAADMIVHEKPVDPEDASANK
GAGKAENANEGIARKARKGASKKANAVKGDSAGKESSPAGAKSGKSLQLKAGNRNITISN
PGKLYWPREKISKGDLVAYYQEMSGYLLPYLKDRPQSLHRHPDGITKAGFFQKDFDLKNA
PEWIKTVPIHSESNNKEIDYLVCNNEATLLYMANLGCIEINPWLSRSPRIDFPDYIAIDL
DPEKISFSAVIEAALAVKEVLDNLELGGFCKTSGATGLHIYIPLTRRYNFEVTRIAAQFI
AQKAHELLPAITSLVRSPSKRQKKIYLDYLQNTRGQTLAAPYSARPRPQATVSAPLNWAE
VNEKLNPGDFTIHTIGNRVKQLGDLWEATGKTKNSLSNILKASKS
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaacaacctatagaaagaaaaggagttttaaggacagtcctgaacccaaacca
aaacgcgaaggcaaaaatgcgcgaaaggaggacaaaaagctccggttcgtagtgcagcgc
catcatgcttcccgcttgcattatgatttccggctggaaatggagggtgtcctgaaaagc
tgggcagtacctaagggcccttcgctgaacccttccgacaaacgcctggccatgatggtg
gaagaccatccttatgactataaggactttgaggggatcatccctgaagggaattacggg
gcaggcgttgtgtacaaatgggacgaaggcttttatgagccgcttgacaaaagcgccaac
ccggaaaaggaactgctaaaggaattaagatccggcagcctcaagtttttattgaaaggg
aaaaagttaaaaggggaatttgccctggtgaagatgaagggtgcggaagacaattcctgg
ctcctcattaaacataaagacaaattttcaacagaaacaccttacaatagcgaagaccag
gttcccgccgcaataaaggagaaaaaaaataaccgaaaaaaaagcggcgcatcccggcgc
ccggcaggtgaagagacaaaacgcaccgcagccagggcttccgccgcagatttcatcaaa
cctatgctggccacgctcataggcaaacccttcagcagggaaggctggttgtttgaaaac
aaatgggacggttaccgcgccatcgccgaagttagcagcggcgccgtccggctctattca
cggagcggcaaatcatttaataaagattatgaacctatagccggtatcctgtcggaaatt
gaacacgacctggtgcttgacggcgagatcgtggccctcaacaagcagggaaaacccgaa
ttccagctattacagaactataaaaaaagcgccaaaggcaccctcgtttattatgttttt
gacctcctggaattcaaaggatatgatcttaaaagcatggagcttttccagcgcaaagag
ttgctaaatgaattatttaactctttgggggaattaagatctgccggaacaaaagacgcc
cgggttcaaaatacggagtatgtaattaatgaaggagagaagtattttaagaagatcctc
agggaaaaaggcgaaggtttgctggcaaagtcaggcagcagcagctaccagcccggccgc
aggagtgatcaatggctgaaaataaaaacccatcagcggcaggaagcgattatagcaggt
ttcacggatcccagggaaagccgcaaaaaatttggcgcgctgatacttgccgttaatgaa
aacgggaagctgaagtacatcggccacacaggcggagggtttaaccaggaatcactcaat
gacgtctatgaaaaaatgcggccgctcatacaagacaaaagcccttttgataaaaagcca
aaaaccaacgcgccggttacctggctaaagcccgaactggtttgcgaagtaaaatttgcc
gaatggaccaatggagggcatatgcgccagcctatttttatcgccctgagagaagataaa
gcagcggacatgatcgttcatgaaaaacctgttgaccctgaggatgcgagcgcaaacaag
ggcgcagggaaagcggaaaacgcgaatgagggtatagcaaggaaagcgcgtaaaggggcc
tctaagaaagctaacgcagtcaaaggcgacagtgccggtaaagaaagcagcccggccggc
gccaaatccggcaaaagtctccagctaaaggcagggaaccggaatattaccataagtaat
cccggcaaattatactggccccgggaaaagatcagcaagggggatctggtggcttattac
caggagatgtccggctacctgctgccttacctgaaggaccgcccccagtcgctgcaccgg
caccctgacgggattaccaaggcaggatttttccaaaaggactttgatctgaaaaacgcg
ccggagtggataaaaaccgttcccattcattcggaatcgaataataaggaaatcgactac
ctggtttgtaataacgaagccacccttctatatatggccaacctgggatgcatcgaaatc
aatccctggctttcgaggtctccccgcatcgattttcccgattatatagctattgatctg
gacccggaaaaaatttccttttcagccgtaattgaagcggcactggcggtaaaggaagta
ttggataaccttgaactgggcggcttttgtaaaacttccggcgcaaccggcctgcatatt
tacattccccttacccggcgctataattttgaagtaacacggatcgcagcacagttcatt
gcccagaaagcgcatgaattactgcctgctatcaccagcctggtccgcagcccttccaag
aggcaaaaaaagatctatctcgactacctgcagaacacccgcggccaaaccctggcggca
ccctattccgcaaggccccgcccgcaggccacggtatctgcccccctaaattgggcggaa
gtcaacgaaaaactaaacccgggcgactttaccatccatacaatcggaaatcgggtaaag
caactgggagacctttgggaagcaaccggaaaaaccaaaaactcgctaagtaatatttta
aaagcaagtaaatcatga
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