Arthrobacter gengyunqii: MUG94_00250
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Entry
MUG94_00250 CDS
T08980
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ageg
Arthrobacter gengyunqii
Pathway
ageg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ageg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUG94_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ageg03400
]
MUG94_00250
Enzymes [BR:
ageg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUG94_00250
DNA repair and recombination proteins [BR:
ageg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUG94_00250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UOY96273
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All DBs
Position
46891..49518
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AA seq
875 aa
AA seq
DB search
MASSGAGLRQQETVNVDGHRLRLTNLDKVLYPETGTTKADVLSYYAAVAEALLPHSRDRP
ATRKRWVHGVGVPGDPGQVFFQKNIETSAPTWVKRFPIEHKSGTNIYPLVNDLATLIWLA
QSAALEIHVPQWRFGPRGKINNPDRLVLDLDPGEGADLAQCAEVARLARDILADMGLDAR
PVTSGSKGIHLYAALDGKQTSDEVSAVAHELARALEADHPDLIVSDMKKSLRTGKVLLDW
SQNNGNKTTICPYSLRGRFTPTVAAPRTWEELEDPDLAQLDYEQVMQRLDDDGDLLAGMA
TGAGELDAEALEEAVAEGADGGGAGDRLSKYRSMRDAAKTPEPVPAEPAEPSEGNSFVIQ
EHHARRLHWDFRLEHDGVLVSWALPKGPPDSPDQNHLAVQTEDHPLDYGSFAGTIPKGEY
GAGEVRIWDHGTYEPEKWRDGKEVIAVLHGQPDGGLASEGSADRRFALIHTGGKGGKGGD
NNWLIHLMKHQPAPADNVDKTDTAAAASPTATVAAAAAAPAPAAKALPDTAGVSKAVAAD
AGEHGMPAVEPMLATLGTRADVNDADGNEHDEWAFEMKWDGVRAVVDVTPEGTRLISRNG
NDMTAAYPELQELSRHLNGERAVLDGEIVAINKAGRPDFGLLQPRMHLTKRREIEAAAAR
TPVHLMLFDLLWLDGNSLLDLPYTQRREILESAVDPAGEDGHVQVPPALDMSMDEAVEAS
KELGLEGVIAKRRTSTYAPGRRSKNWIKLKNSFTQEVVIVGWRPGKGNRASKIGSLLVAV
PDGHELTYIGRVGSGLSEKDLALVGGRLKKLARKTPPLDGVPSADASDAQWVRPVLVGEV
TYSERTSTGKLRHPAWRGLRPDKKPSDVVVETPES
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcagcggagcgggtctgagacagcaggagaccgtgaatgtggacggacaccgc
ctgcggctgaccaatctcgacaaggtgctgtatccggaaaccggaaccaccaaggcggat
gtactgtcctattacgccgccgtggccgaggcgctgctgccccattcccgcgaccgtccg
gccacccgcaagcgctgggtccacggggtgggggttcccggagatccggggcaggttttc
ttccagaagaacattgagacctcggctcccacctgggtgaaacggtttccgatcgagcac
aaaagcggcaccaatatttatccgctggtcaatgacctggcgacgctgatctggctggcg
cagagcgcagccctggaaatccatgtgccgcagtggcgcttcggtccgcgcggcaagatc
aacaacccggaccgcctggtgctggaccttgatccgggggagggtgcggacctggcgcag
tgcgccgaggtggcccgcctggcccgggacatcctcgcggacatgggcctggacgcccgc
ccggtcaccagtggttccaagggcatccacctgtatgccgcgctggacggcaagcagacc
tcggacgaggtcagcgccgtcgcccatgaactggcgcgggcgctggaagcggaccatccg
gacctgatcgtgtccgacatgaaaaagtcgctgcgcaccggcaaggtgctgctggactgg
agccagaacaacggcaacaaaaccaccatctgcccctactcgctgcgcggcaggttcacg
cccacggtggcggcgccgcgcacctgggaggagctggaggatccggacctggcccagctg
gactatgagcaggtgatgcagcggctggatgacgacggcgatctgctggcaggcatggcc
accggtgccggggaactggacgccgaggcgctggaggaggccgtggcggaaggggccgac
ggcggcggggcgggggaccggctcagcaaataccgcagcatgcgtgacgccgcgaaaact
ccggaaccggtcccggcggaacctgccgagccgtcggagggcaacagctttgtcatccag
gaacaccacgcccgccgcctgcactgggattttcggctggagcacgacggtgtcctggtc
tcctgggcgctgcccaagggtccgcccgactcgccggaccagaaccatctggcggtgcag
accgaggaccatccgctggactacgggagctttgcgggcaccattcccaagggggaatac
ggggcaggcgaggtgcgcatctgggaccacggaacctacgagccggagaaatggcgcgac
ggcaaggaagtcattgccgtgctgcacggccagcccgacggcggcctggcgtccgaggga
agcgcggaccgccgcttcgccctgatccacaccggaggcaagggcggcaagggcggagac
aacaactggctgatccatttgatgaagcaccagcccgcgcccgcggacaacgtcgacaag
acggacacggcagcggcagcgtcgcctactgccactgtggcagccgccgcggcagcacct
gccccggccgccaaggcgttgccggacaccgccggggtgtccaaggccgtcgcggccgat
gccggggaacacggcatgcccgccgtggaaccgatgctcgccacgctcggcacccgggcg
gacgtgaacgacgctgatggaaacgaacatgacgaatgggccttcgaaatgaagtgggac
ggcgtccgcgccgtggtggacgtgacgccggagggaacccggctcatcagccgcaacggc
aacgacatgaccgccgcctatcccgaactgcaggaactgagccggcatctgaacggggaa
cgcgcggtcctggacggggaaatcgtcgcgatcaacaaggcgggccggccggacttcggg
ctgctccagccgcgcatgcacctcaccaagaggcgcgaaatcgaggccgccgcagcccgc
actcccgtgcacctgatgctctttgacctgctctggctggacggaaactcactgctggac
ctgccctacacgcagcgccgtgagatcttggaatctgctgtggacccggcgggggaggac
ggccacgttcaggtgccgccggcgctggacatgtccatggacgaggcagtggaggccagc
aaggagctcggtctggaaggggtcattgccaaacgccggaccagcacctacgcccccgga
cggcgttccaagaactggatcaagctcaagaactccttcacccaggaagtggtgattgtc
ggctggcgcccgggcaagggcaaccgggcctccaaaatcggctccctgctggtggccgtt
ccggacggtcacgaactgacttacattggccgggtgggctccggactgagcgaaaaagat
ctggccctggtgggcggaagactcaagaagctggcccgcaaaacgcctccgctggacggt
gttcccagtgccgacgcttccgacgcacagtgggtgcgtcccgtcctggtgggagaagtg
acctactctgaacgaacatccaccggcaagctgcgccatcccgcctggcgcggcctgcgc
ccggacaagaaaccctccgacgtcgtcgtcgaaacccctgagtcctga
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