Arthrobacter gengyunqii: MUG94_05040
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Entry
MUG94_05040 CDS
T08980
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ageg
Arthrobacter gengyunqii
Pathway
ageg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ageg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUG94_05040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ageg03400
]
MUG94_05040 (mfd)
Enzymes [BR:
ageg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUG94_05040 (mfd)
DNA repair and recombination proteins [BR:
ageg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUG94_05040 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
UOY97132
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All DBs
Position
1105944..1109570
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AA seq
1208 aa
AA seq
DB search
MSLNGLRAALAEDPSYARVRTLASRTPERRSEDLQIGAPQGMRAALLAEMVDGLAEAAKA
ADDAGTANTSAAPPVVLAVTATGREAEDLAAALRSYLPLAGIEEFPSWETLPHERLSPRS
DTVGRRLSVLRRLAHPEGHPISVIVAPVRAVVQPMVAGLGDLQPVSLKVGEERKFDDVVR
ALSDAAYARVDMVSHRGEFAVRGGILDVFPPTEDHPIRIDFFGDEVDSMRWFAVADQRTL
TGPHVTHPAELYAPPCREILITPSVMSRAAKLQSQMPAAADMLEKIAGGIAVEGMESLAP
VLVDEMVPLMGQLPAGSLSVIIEPEKVRARAHDLAATNEEFLAAAWATASDGGSAPLDLS
AGISADLEAASFRSLADTRSAALANSVGWWSITSFNPDDETVLDIDTLTINAREPRGYQG
DVAEMMEFIGSRVRDAWRVVVVTEGPGPASRLAELFRDNDIPASLTESVDTEPVPGIISI
TTASAGRGYVVDGLKTGLLTEADLLGRASAYSTRDMRKMPSKRRNAVDPLQLHEGDYVVH
EQHGVGRFVELIQRATGAGQNKTVREYLVLEYAPAKRGGPGDRLFVPTDQLDQITRYVGG
ETPVLSKMGGSDWAKTKSRARKAVKEIAGELIRLYSARMASKGHAFAKDTPWQRELEEAF
PYVETPDQLTTINEVKADMEKEVPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP
TTLLAQQHMETFGERFSGFPVRVESLSRFQTSKQAKETVEGVKNGSVDVVIGTHRLLSQE
VQFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLA
TPPEERHPVLTYVGPYTDRQASAAIRRELMREGQVFFVHNRVSSIDRTAAHLRELVPEAR
IAVAHGQMSESKLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDRADHFGLSQLH
QLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGN
LLGGEQSGHIAGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHDYVPGERL
RLEAYRKLASAVTYEAIDEVLAELVDRYGEPPQAVQNLIDVARFRVNAREAGLTDVALQG
NFIKFAPADLPESRTMRLQRMYPGAQVKPALNAVLVPKPKTARIGGRDLVDAEILAWAQQ
VVDAVFKE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcgcgccgccctggccgaagacccgtcctacgcgcgggtgcga
accctcgcctcgcgcacccccgagcgacgcagcgaagacctgcagatcggtgccccgcag
ggcatgcgcgcggcgctgctggcggagatggtggacgggctcgccgaagccgccaaagca
gccgacgacgccggcaccgccaacacttccgccgcgccaccggtggtgctcgctgtcacg
gccaccggccgcgaggccgaggacctggctgccgccctgcgctcctacctgccgctggcc
gggatcgaggagtttccgtcctgggagaccctgccgcatgaacgcctctcgccgcgctcg
gacaccgtgggccggcgcctgtcggtgctccgccggctcgcccatcccgaaggccatccc
atctccgtgatcgtggccccggtgcgcgccgttgtccagccgatggtggccgggctggga
gatctgcagccggtgtcactgaaggtgggggaggagcggaagttcgacgacgtcgtcagg
gcactgtccgacgccgcctacgcccgggtggacatggtctcgcaccgcggcgaatttgcc
gtccggggaggcatcctggacgtctttccgcccaccgaggaccatccgatccggatcgac
ttcttcggcgatgaggtggactccatgcgctggttcgcggttgccgaccagcgcaccctc
accggaccgcacgtcacccatcccgccgagctgtacgctccgccctgccgggaaatcctg
atcaccccgtcggtgatgagccgcgccgcgaagctgcagtcccagatgcccgctgccgcg
gacatgctggaaaagatagccggcggcatcgccgtcgaaggcatggaatccctggccccg
gtgctggtggatgaaatggtgccgctgatgggccagctgcccgccggctcgctgtccgtg
atcatcgaacccgaaaaggtccgcgcccgcgcccatgacctggcggccaccaacgaggaa
ttcctcgccgccgcgtgggccacggcgtccgacggcggttccgcaccgctggatctgtcc
gccggcatcagcgccgacctggaggccgccagcttccggtccctggccgacacccgctcc
gctgccctggccaactcggtgggctggtggtccatcacctcgttcaacccggacgatgaa
actgtcctggacatcgacaccctgaccatcaacgcccgcgaaccgcgcggctaccagggc
gatgtggcggaaatgatggagttcatcggctcccgcgtccgcgacgcgtggcgcgtcgtc
gtcgtcaccgaaggccccggcccggcctcccgcctggcggaactgttccgcgacaatgac
attcccgcctcgctcaccgaatccgtggacaccgaaccggtgccgggcatcatctccatc
accacggccagcgccggccgcggctacgttgttgacgggctgaagaccgggctgctgacc
gaggccgacctgctgggccgggccagcgcctactccacccgcgacatgcgcaagatgccc
tccaagcggcgcaacgccgtcgaccccctgcagctgcacgagggcgactatgtggtgcat
gagcagcacggtgtgggccggttcgtggaactgatccagcgggccaccggcgccgggcag
aacaagacggtgcgcgaatacctggtgctcgaatacgcccccgccaagcgcggcggcccc
ggcgaccggctgtttgtacccaccgaccagctggaccagatcacccgctacgtgggcggg
gaaacaccggtgctgtccaagatgggcggctcggactgggcaaagaccaagtcccgtgcc
cgcaaggcggtcaaggagatcgccggcgagctgatccggctctattccgcccggatggcg
tccaaggggcacgcgttcgcgaaggacaccccgtggcagcgcgagctggaggaagccttc
ccgtatgtggagacaccggaccagctgaccaccatcaacgaggtcaaggcggacatggag
aaggaagttcccatggaccgcctggtctccggcgacgtgggctacggcaagaccgagatt
gcggtgcgtgccgcattcaaggccgtgcaggacggcaagcaggtggcggtgctggtgccc
accacgctgctggcccagcagcacatggaaaccttcggcgaacgcttctccggctttccg
gtccgggtggaatccctgtcccggttccagacatccaagcaggccaaggaaaccgtcgag
ggtgtgaagaacggttcggtggacgtggtgatcgggacccaccggctgctctcgcaggag
gtgcagttcaaggacctgggcctggtgatcgtggacgaggagcagcgcttcggcgtggaa
cacaaggaagcgctgaagaagatgcgcaccaacgtggacgtgctggccatgagcgccaca
ccgattccgcgcaccctggaaatgtcgctgaccggtatccgggaaacctccaccctggcc
accccgccggaggaacggcatccggtgctgacctatgtcggtccgtacaccgaccggcag
gcgtcggccgcgatccgccgcgaactgatgcgcgagggccaggtgttcttcgtgcacaac
cgggtgtcctccatcgaccgcaccgccgcgcacctgcgtgagctggttccggaggcgcgc
atcgccgtcgcgcacgggcagatgagcgaatccaagctggaacagatcattgtggacttc
tgggaaaagcgctttgacgtgctggtgtgcaccaccatcattgaaaccggcctggacatc
tccaacgccaacacgctgatcgtggaccgcgcggaccacttcggcctgtcccagctgcac
cagctgcgcgggcgtgtgggccgcggccgggaacgcgcgtacgcgtacttcctgtacccg
tccgagaagccgctgggcgaggtggcactggaacggctcaaggccgtggccacgcacaac
gagcttggcgcgggcatgcagctggccatgaaggacctggaaatccgcggggcgggcaac
ctgctcggcggagagcagtcaggccacatcgccggcgtcggctttgacctgtacatccgg
ctggtgggcgaggccgtggctgattaccgcggcgaggccgaggagaaagccgccgaaatg
aaaatcgagctgccggtcaacgcacacctgccgcacgactacgtgccgggggagcggctg
cggctggaggcctaccgcaagctggcttcagccgtgacgtacgaggcgatcgacgaggtg
ctggccgagctggtggaccgctacggcgagccgccgcaggccgtgcagaacctcattgac
gtggcccggttccgggttaacgcgcgtgaagccgggttgacggacgtggcgctgcagggg
aacttcatcaagtttgccccggcggacctgcccgaatcccggaccatgcgcctgcagcgg
atgtatcccggcgcgcaggtgaagccggcgctgaacgcggtgctggtgcccaagcccaag
accgcgcggatcggcgggcgggacctggtcgacgccgagatcctggcctgggcccagcag
gtggtggacgcggttttcaaggagtga
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