Agromyces protaetiae: ET445_08430
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Entry
ET445_08430 CDS
T05835
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
agf
Agromyces protaetiae
Brite
KEGG Orthology (KO) [BR:
agf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agf03019
]
ET445_08430 (hrpA)
Enzymes [BR:
agf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ET445_08430 (hrpA)
Messenger RNA biogenesis [BR:
agf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ET445_08430 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
HA2_N
AAA_22
T2SSE
nSTAND3
ResIII
SLFN-g3_helicase
AAA_30
NACHT
AAA_11
AAA_23
UvrD-helicase
PhoH
SRP54
FtsK_SpoIIIE
AAA_16
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
QAY73368
UniProt:
A0A4P6FS52
LinkDB
All DBs
Position
complement(1797727..1801743)
Genome browser
AA seq
1338 aa
AA seq
DB search
MSPTVPVITYPPELPVSAQRDEIARALRDHQVVIVAGATGSGKTTQLPKICLELGRTSIA
HTQPRRIAARTIAERISEELHVELGDLVGYQVRFTDQVSDKTQIKVMTDGILLNEIHRDR
ELRKYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKVVVTSATIDPESFAKHFADASG
EPAPVIEVSGRTYPVEVRYRPLVAENGAGSGGAGEDSDDDDAAADDKDVQRGILAALDEL
ERESSGDVLVFLSGEGEIRDAEQAVRAHTTKRGAAGITEVLPLYGRLSAADQHKVFEPSK
VAGLKRRIVLATNVAETSLTVPGIRYVVDAGTARISRYSVRSKVQRLPIEAISQASANQR
SGRSGRTSDGIAIRLYSEEDFERRPEFTDPEILRTNLAAVILQMASLGLGQIEEFPFLTP
PDSRGIRDGLDLLRELGALEASDDDGRGPRLTQVGRQLSRLPIEPRFARMVLESKAQGVS
RDVLAIVAGLTVQDPRERPLERREQADASHARFTDPTSDFLTLLNLWNHLEAQQRELSGS
AFRRLCKSEYLNYLRVREWQDLYRQLVRLAKPLGLHVAKEPGAPNPDGIHRALLAGLLSH
IGLRDDAKTGSGRGGAGNAREAERKGRRQAAEFLGARGTRFVVFPGSALAKKPPQAIMSA
ELVETSRLFARMNAAIDPAWAEPLAGSLAKRTWSEPRWERRQGAAVADEKVTLFGVPIVP
KRRIQLARIDRALAREFFVRHALVEEDWDWGRLDKRVYGFVRKNRELRRSLGELEERTRR
RDILSGDEAVFAFYDARVDAAATDSRAFERWWRGAFREAPDLLTMVRADLVDDDGDGRGD
GFPDRWKQGDQTLKLAYRFEPGTDDDGVTVIVPLVLLPRLDATGFDWQVPGLRDELVTAM
LRTLPKVLRRQVVPAADWAAKISDELPAGPESGATRDPFAAVVGRTIRKLTFAPVDPSDF
DLERVPPHLRVTFRAVDERGRAVGSDKSLAALQARLAERAGQAVARTFGGADASSARRGS
ATATTGPTDVAAASASVPAGPALAEKTGITTWEWDRLPAHVDTRQAGNVIRAYPALVDDG
GTPGSVSLRLLATAEERDRASRRGIRRLLVLATPSPVAYVQEHLSNDEKLRLAQSAYSGP
RALLDDCLAAIVDAELRARHPDGLIWTRAEFDAVRDAVGAAVMDRMFDTVALVARILKAA
READQAISKAASLTLMSPLADARAQLEALVPAGFVSATGLERLRHLPRYLEGITMRVKKL
QADPGRDRRFMTEYEDAAKVFEAEGGRIPLPAGTDPVADERLVRVRWMLEELRIALFAQE
LRAAESVSVQRIRKALAG
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacggtccccgtgatcacctacccgcccgaactgccggtctccgcgcagcgg
gacgagatcgcgcgcgccctgcgcgaccaccaggtcgtcatcgtcgcgggcgcgaccgga
tcgggcaagacgacgcagttgcccaagatctgcctcgaactcgggcgcacgtcgatcgcg
cacacgcagccccggcgcatcgcggcgcgcacgatcgccgagcgcatctcggaagagctg
cacgtcgaactcggcgatctcgtcggctaccaggtgcgcttcaccgaccaggtgagcgac
aagacgcagatcaaggtcatgaccgacggcatcctgctgaacgagatccaccgcgaccgc
gagttgcgcaagtacgacacgatcatcatcgacgaggcacacgagcgcagcctcaacatc
gacttcctgctcgggtacctgaagcgcctcctcccccgacgcccagatctcaaagtcgtc
gtcacgagcgcgacgatcgaccccgagagcttcgccaagcatttcgcggatgcctccggg
gagccagctcccgtcatcgaggtctccggtcgcacctaccccgtcgaggtgcggtaccgg
cccctcgtcgccgagaacggcgcaggctcgggcggcgcaggcgaagacagcgacgacgac
gacgccgcggccgacgacaaggacgtgcagcggggcatcctcgccgcgctcgacgaactc
gagcgcgagtcatccggcgacgtcctcgtcttcctctcgggcgagggcgagatccgcgac
gccgagcaggcggtgcgcgcgcatacgacgaagcgcggtgcggcgggcatcaccgaggtg
ctgccgctgtacggccggctttcggcagccgaccagcacaaagtgttcgagccgtcgaag
gtcgccggcctcaagcggcgcatcgtgctcgcgacgaacgtcgccgagacgagcctcacg
gtgcccggcatccggtacgtcgtcgacgcgggcacagcacgcatcagccgctactcggtg
cgttcgaaggtgcagcggctgcccatcgaggcgatctcgcaggcgtcggcgaaccagcgc
tcggggcgctctggtcgcacgagcgacggcatcgcgatccgcctctactccgaagaggac
ttcgagcgccggccagagttcaccgaccccgagatcctgcgcacgaacctcgcggccgtc
atcctgcagatggcgtcgctcgggctcgggcagatcgaggagttccccttcttgacaccg
cccgattcgcgcggcatccgcgacggactcgacctgctgcgcgaactcggcgcgctcgag
gcatccgacgacgacggccgcgggccgcgactcacgcaggtggggcgacagctctcgcgg
ctgccgatcgagccgcgcttcgcgcgtatggtgctcgagtcgaaggcacagggcgtgagc
cgcgacgtgctcgcgatcgtcgcggggctcacggtgcaagacccgcgtgagcgtcccctc
gaacggcgcgagcaggcggatgcctcgcatgcgcgcttcaccgacccgaccagcgacttc
ctgacccttctgaacctctggaaccacctcgaggcccagcagcgcgagctgtcggggagc
gcgttccgacggctctgcaagagcgagtacctcaactacttgcgcgtccgggagtggcaa
gacctctaccgccagctcgtgcggctcgcgaagccgctcgggctccacgtcgccaaagag
cccggcgcgccgaaccccgacggcatccaccgcgcgctgctcgccgggctgttgtcgcac
atcggcctgcgcgacgacgcgaagaccggctcggggcgcggtggggcaggcaacgcgcgc
gaggccgagcgcaagggccgccgccaggccgccgagttcctcggcgcgcgcggcacgcga
ttcgtcgtgttccccggatcggcgctcgcgaagaagccgccgcaggcgatcatgagcgcc
gaactcgtcgagacgagccggctgttcgcgcgcatgaatgcggcgatcgaccccgcgtgg
gccgagccgctcgccggatcgctcgcgaagcgcacgtggtcggagccgcggtgggagcgc
cggcagggcgcggccgtcgccgacgagaaggtcaccctgttcggcgtgccgatcgtgccg
aagcggcgcatccagctcgcgcgcatcgaccgcgcgctcgcgcgtgagttcttcgtgcgg
cacgcgctcgtcgaagaggactgggactggggtcgcctcgacaagcgcgtctacggattc
gtgcggaagaaccgcgaactccgccggtcgctcggcgagctcgaggagcgcacgcgtcgg
cgtgacatcctgtctggcgacgaagccgtcttcgcgttctacgacgcgcgcgtggatgcc
gcagcgaccgattcgcgcgcgttcgagcgctggtggcgcggggcgttccgcgaggcgccc
gacctgctcactatggtgcgcgccgacctcgtcgacgatgacggcgacggccgcggtgac
ggcttccccgaccgctggaagcagggcgatcagacgctcaagctcgcctaccggttcgag
cccggtaccgacgacgacggcgtgaccgtcatcgttccactcgtgctgctgccccggctc
gacgccacgggcttcgactggcaggtgccgggactccgcgacgaactcgtgaccgcgatg
ctgcggacgctgccgaaggtgctgcgccgccaggtcgtgcccgccgccgactgggccgcg
aagatctccgacgaactgcccgccgggcccgagtcgggcgcgacgcgcgacccgttcgcg
gccgtcgtcgggcggaccatccgaaagctcaccttcgcgcccgtcgacccgagcgacttc
gacctcgagcgcgtgccgccgcacctgcgcgtcacgttccgcgcggtcgacgagcgcggg
cgcgcggtcggcagcgacaagagcctcgcggcgctgcaggcgcggctcgccgagcgcgcg
gggcaggcggtcgcgcgcacgttcggcggggcggatgcctcgagtgcgcgccgtgggagc
gccactgcgacgacaggcccgaccgatgtcgccgcggcgagcgcgagcgtgccggccggt
cccgcactcgcggagaagacggggatcacaacgtgggagtgggaccggctgcctgcgcac
gtcgacactcggcaggccggcaacgtcatccgcgcgtacccggcgctcgtcgacgacggc
ggcacgccagggtcggtgtcgctcaggctgctcgccacggcggaggagcgcgatcgggcg
tcgcgccgaggcatccgtcgtctgctcgtgctcgcgacgccgtcgcccgtcgcctacgtg
caggagcacctctcgaacgacgagaagctgcggctcgcgcagagtgcctactcgggcccg
cgtgcgctcctcgacgactgcctcgcggcgatcgtcgacgcagagctgcgggcgaggcat
cccgacggtctcatctggacgcgcgcggagttcgacgccgtccgcgacgccgtcggcgcg
gccgtcatggaccgcatgttcgacaccgtcgcgctcgtcgcccgcatcttgaaagccgcc
cgcgaagccgaccaggcgatctcgaaggccgcgagcctcacgctcatgtcgccgctcgcc
gatgcgcgcgcccaactcgaggcacttgtgcccgcgggattcgtgtcggcgacgggcctc
gaacgcctccggcacttgccgcgctacctcgagggcatcacgatgcgcgtgaagaagctg
caggccgatcccggccgcgaccggcggttcatgaccgagtacgaagacgcggcgaaggtc
ttcgaggccgagggcgggcgcatcccgctgccggcgggcacggacccggtcgccgacgaa
cgcctcgtgcgcgtgcggtggatgctcgaagagctgcgcatcgcgctcttcgcgcaagag
ctgcgcgcggccgagtcggtgtcggtgcagcgcatccgcaaggcactcgcgggctga
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