Agrococcus sp. SGAir0287: C1N71_03970
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Entry
C1N71_03970 CDS
T05973
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agg
Agrococcus sp. SGAir0287
Pathway
agg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N71_03970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agg03400
]
C1N71_03970 (mfd)
Enzymes [BR:
agg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N71_03970 (mfd)
DNA repair and recombination proteins [BR:
agg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N71_03970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCR20642
UniProt:
A0A4P8R7Y2
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All DBs
Position
856088..859573
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AA seq
1161 aa
AA seq
DB search
MRAPLLAAIASTDRPLLVVTSTKREADALVAELGAWLPSATVVGFPAWETLPHERLSPSP
ETVGQRWRALHDVRTRPAGTPAIVVASARAALQPTPVGLGETRAIVLEAGQRGVDLPDLT
RALVGHAYQRVDMVTRRGEFAVRGGILDVFSPAEEHPIRVDLFGDEVEQLRWFRVADQRS
DPEPVPAIELPPARELLLTDDVRERAAALQPELPAVEGMLERIANGIVVEGMESLAPLLL
PGLVPLTDHLPEAAVAVIGPERVRDRVASLADTNREFLEAAWSAAVAGAQVPVDLASGGF
LELGALREAADGPWYALSAFGTDLSDDAAEVVPSLPNPIGQGAEAAVDAVAALARDGWRV
VVTAAGHGTGERAASVLAERGVAARQADALPATLEPGVVHVTKANVEHGFRVEDGRIALV
SEAELFGRAVGVDARAPRRLATRRGTVVDPLQLKPGDLVVHETHGIGRFVELTQRTVSSG
GRNATQTVREYLVLEYAPSKRGQPGDRLSIPTDQLDQLSRYVGGESPQLSRMGGSEWQAA
KSKARKAVRDIAVELVRLYAARMSSKGHAFGPDTPWQHELEDAFPYAETPDQLTTIDEVK
RDMEREVPMDRLLSGDVGFGKTEVAVRAAFKAIQEGKQVAMLVPTTLLVRQHHETFTARF
AGFPVQVAALSRFQTAAEAKETRQGLLDGTVDMVIGTHRILTDAVRFKDLGLVIIDEEQR
FGVEHKDALKQLKTNVDVLSMSATPIPRTLEMAVTGIREMSTLATAPEARHPILTFVGPY
SDQQVAAAIRRELLREGQVFFVHNRVSSIARTAARLSELVPEARIAIAHGKMHEQQLEQV
IVDFWERRFDVLVSTTIVETGLDIPNANTLIVDRAERYGLSQLHQLRGRVGRGRERAYAY
FLYDAETPLSETAHDRLETIAVHNELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFD
LYLRMVGEAVSTFRGDAEDAPRELRLELPVDAVIPESYLDAERLRLEAYQKLSAAASSPS
DTAIDTVADELRDRYGPPPQQVETLLAMARLRRQAMRSRLSEVITVGPNLRVGPAELPES
LQLRMRRMYPNARLNASARSLLVPVPTAGGGRLAGTQTQPLPDAELIAWVSQLLTALFPP
PTPAEPAALDADGAPVERADG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcgccgctgctcgcggccatcgcatcgaccgatcgtccgctgctcgtcgtcacg
tcgacgaagcgcgaggcggatgcgctcgtcgccgagctgggcgcgtggctgccgagcgcg
accgtcgtcggcttccccgcctgggagacgctgccgcacgagcggctgagcccgagcccc
gagacggtgggccagcggtggcgcgccctgcacgacgtgcgcacgcgaccggcgggcacg
cccgcgatcgtcgtcgcctccgcgcgcgccgcgctgcagcccacgcccgtcggcctcggc
gagacgcgcgcgatcgtgctcgaggccgggcagcgcggcgtcgacctcccggacctcact
cgcgcgctcgtcgggcacgcctaccagcgcgtcgacatggtgacgcgccgcggcgagttc
gcggtgcgcggcggcatcctcgacgtcttcagcccggcggaggagcaccccatccgagtc
gatctgttcggcgacgaggtggagcagctgcgctggttccgcgtcgccgaccagcgctcg
gaccccgagcccgtgcccgcgatcgagctgccgccggcacgcgagctgctgctcaccgac
gacgtgcgcgagcgcgccgccgcgctgcagcccgagctgcccgccgtcgagggcatgctc
gagcgcatcgcgaacggcatcgtcgtcgagggcatggagtcgctcgcaccgctcctgctg
cccgggctcgtgccgctcacggaccatctgcccgaggctgcggtcgccgtcatcggcccc
gagcgcgtgcgggaccgcgtcgcgagcctcgccgacacgaaccgcgagttcctcgaggca
gcctggtcggcggccgtcgcgggtgcgcaggtgcccgtcgatctcgcctcgggcggcttc
cttgagctcggcgcgctgcgcgaggccgccgacgggccctggtacgcgctgtcggcgttc
ggcaccgacctctccgacgatgccgccgaggtggtgccgagcctcccgaaccccatcggt
cagggcgcggaggcggccgtcgacgccgtcgccgcgctcgcccgcgacggctggcgcgtc
gtcgtgaccgccgccgggcacggcacgggggagcgggcggcatcggtgctcgccgagcgc
ggcgtcgccgcccgtcaggcggacgcgctgcccgcgacgctcgagcctggcgtcgtgcac
gtgacgaaggcgaacgtcgagcacggcttccgcgtcgaggacgggcggatcgccctcgtg
agcgaggccgagctcttcggccgcgcggtcggggtcgacgcgcgggcgccgcggcgtctc
gcgacgcgtcgcggcaccgtcgtcgacccgctgcagctgaagcccggcgatctcgtcgtc
cacgagacgcacggcatcggccgcttcgtcgagctgacccagcgcaccgtctcgtcgggc
ggacgcaacgcgacgcagacggtgcgtgagtacctcgtgctcgagtacgcgccgtcgaag
cggggccagccgggcgatcgactctcgatcccgaccgaccagctcgaccagctctcgcgc
tacgtcggcggcgagagcccgcagctgtcgcgcatgggcggcagcgaatggcaggcggcg
aagtcgaaggcgcgcaaggcggtgcgcgacatcgccgtcgagctcgtgcggctctacgcc
gcgcgcatgtcgtcgaaggggcacgcgttcggacccgacaccccgtggcagcacgagctc
gaggacgcgttcccctacgccgagacgcccgaccagctcacgacgatcgacgaggtcaag
cgcgacatggagcgcgaggtgccgatggatcgactgctctcgggcgacgtcggcttcggc
aagaccgaggtcgcggtgcgtgcggcgttcaaggcgatccaggagggcaagcaggtcgcg
atgctcgtgccgacgacgctgctcgtgcgccagcaccacgagacgttcacggcgcgcttc
gcgggcttccccgtgcaggtcgccgccctcagccgcttccagaccgctgcggaggcgaag
gagacgcggcaggggctcctcgacggcaccgtcgacatggtcatcggcacgcaccgcatc
ctcaccgacgccgtccgcttcaaggacctcggtctcgtgatcatcgacgaggagcagcgc
ttcggcgtcgagcacaaggatgcgctcaagcagctgaagacgaacgtcgacgtgctgtcg
atgtcggcgacgcccatcccgcgcacgctcgagatggcggtcacgggcatccgcgagatg
tcgacgctcgccacggcgcccgaggcgcgccacccgatcctcaccttcgtcggcccgtac
tccgaccagcaggtcgccgccgcgatccgccgcgagctgctgcgcgagggccaggtgttc
ttcgtgcacaaccgggtctcgtcgatcgcccgcacggccgccaggctgtcggagctcgtg
ccggaggcgcgcatcgcgatcgcgcacggcaagatgcacgagcagcagctcgagcaggtc
atcgtcgacttctgggagcggcgcttcgacgtgctcgtgtcgacgacgatcgtcgagacg
ggcctcgacatcccgaacgccaacacgctcatcgtcgaccgcgccgagcgctacgggctc
agccagctgcatcagctgcgcgggcgcgtcgggcgcggccgcgagcgcgcgtacgcgtac
ttcctctacgacgccgagacgccgctgtcggagacggcgcacgatcgcctcgagaccatc
gccgtgcacaacgagctcggcgcgggcatgcaggtcgcgatgaaggacctcgagatccgc
ggtgcgggcaacctgctcggcggcgagcagtcgggccacatcgcgggcgtcgggttcgac
ctctacctgcggatggtcggcgaggccgtgtcgaccttccgcggcgacgcggaggacgcg
ccgcgcgagctgcgcctcgagctgccggtcgacgccgtcatccccgagtcgtacctcgac
gccgagcgcctgcggctcgaggcgtaccagaagctctcggcggcggcctcgtcgccgtcg
gacaccgcgatcgacaccgtcgccgacgagctgcgcgatcgctacggacccccgccgcag
caggtcgagacgctgctcgcgatggcgcgcctgcgccggcaggcgatgcgctcgcgcctg
tccgaggtcatcaccgtgggcccgaacctgcgcgtcgggccggcagagctgccggagtcg
ctgcagctgcgcatgcgccgcatgtacccgaacgcgaggctcaacgcgtcggcgcgctcg
ctgctcgtaccggtgcccacggcgggcggcggtcggctcgccggcacgcagacgcagccg
ctgccggacgccgagctcatcgcgtgggtctcgcagctgctcacggcgctcttcccgccg
ccgacgccggccgagcccgccgcgctcgacgcggacggcgcacccgtcgagcgggcggac
ggctga
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