Agrococcus sp. SGAir0287: C1N71_08665 Help Entry C1N71_08665       CDS       T05973                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism agg  Agrococcus sp. SGAir0287 Pathway agg03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:agg00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     C1N71_08665  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:agg03400]     C1N71_08665 Enzymes [BR:agg01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      C1N71_08665 DNA repair and recombination proteins [BR:agg03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      C1N71_08665 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  QCR20761 UniProt:  A0A4P8R8E4 LinkDB All DBs Position 1811224..1813560 Genome browser AA seq 778 aa AA seqDB search MRVGGRTLGVSNLDKVLYPDAGTTKADVIAYLQEVAPVMLPHVRDRPVTRKRWVHGVGTA EDPGEVFFVKALEQGAPSWIPRRPIEHKEGPKEYPLVEDAATLAWLAQMAALELHVPQWR FGPDGARRDPDRLVLDLDPGEGAGLAQCQEVALLARDLLEDMGLRPLPVTSGSKGIHLYA RIDGLDAEQASALAKAIAVSLEELHPDLVVSSQRKASRVGKVLVDWSQNSGAKTTVAPYS LRGRPTPTVAAPRTWREIESDGLAQLTYREVLERVARDGDLLAPLAPPPMVDRLAVYRQK RSADRTPEPVPDEAPQPTYGRSFVIHEHHASSLHWDLRLEHDGVLMSWAIPKGIPTSGEK DRLAVRTEDHPLEYGRFEGVIPKGEYGAGEIRIWDAGDYTVKDWDPGLKAVTLHGRPDGG LGGSPVRIALVQTDGDQWLCHRMRLPTASAERSQRSRGAAVPRTPSPMLASTRSLADVGD GWVFEPKWDGWRALVTVDGDDVRLRSRSGQSLTDGFSELLAPIRQAVTAERAIVDGELVA GAGGGDFSSLQGRLGDPRARGRAVDRGEPVALVLFDALEVDGRSLLRLPLAERREELERI VVPSDRVAITEQLSGSAAAIVEASQRLGIEGLVAKRLSSTYQPGARSDDWRKVVHVRTHE VAVVGWLPGEGSLGRTFGSLVLAAPDADGRLRYAGRVGTGFSARDRATIRERLPDQTRAS RAVDDVPPDVARAMTWMRAAVGEVRFTAVTEAGAFRQPVWRGLRPDKSLDDLTPLPDR NT seq 2337 nt NT seq  +upstreamnt  +downstreamnt gtgcgcgtcggtggtcgcacgctcggcgtgtcgaacctcgacaaggtgctctaccccgac gcaggcacgacgaaggccgacgtcatcgcgtacctgcaggaggtcgcgcccgtcatgctg ccgcacgtgcgcgaccgccccgtgacccgcaagcgctgggtgcacggcgtcggcacggcc gaggaccccggcgaggtcttcttcgtgaaggcgctcgagcagggtgcgccctcgtggatc ccccgccgacccatcgagcacaaggaggggccgaaggagtacccgctcgtcgaggacgcc gcgacgctcgcatggctcgcgcagatggcggcgctcgagctgcacgtgccgcagtggcgc ttcggtccggacggcgcgcgccgcgatcccgaccggctcgtgctcgacctcgaccccggc gagggcgccgggctggcgcagtgccaggaggtggcgttgctcgcgcgcgacctgctcgag gacatggggctgcggccgctgcccgtcacgagcggctcgaagggcatccacctctacgcg cgcatcgacggcctggatgcggagcaggcgtccgcgctcgcgaaggcgatcgccgtgtcg ctcgaggagctgcatcccgatctcgtcgtctcgtcgcagcgcaaggcgagccgtgtcggc aaggtgctcgtcgactggagccagaactccggcgccaagacgaccgtcgcgccctactcg ctgcgcggacgcccgacgccgaccgtcgcggcaccgcgcacgtggcgcgagatcgagtcg gacgggctcgcgcagctcacctaccgcgaggtgctcgagcgcgtcgcccgcgacggcgac ctcctcgcgcccctcgcgccaccgcccatggtcgaccgtctcgccgtgtaccgccagaag cgctccgccgaccgcaccccggagcccgtgcccgacgaggcgccgcagccgacgtacggc cgttccttcgtgatccacgagcatcacgcctcgagcctccactgggacctccggctcgag cacgacggcgtgctcatgtcgtgggcgatcccgaagggcatcccgacctccggcgagaag gatcggctcgcggtgcgcaccgaggaccatccgctcgagtacggccgcttcgagggcgtg atcccgaagggagagtacggcgcgggcgagatccgcatctgggatgccggcgactacacc gtgaaggactgggatccgggcctgaaggccgtcacgctgcacgggcgacccgacggcggc ctcggcggctcgcccgtgcggatcgcgctcgtgcagaccgacggcgaccagtggctgtgc caccgcatgcggctgccgacggcgtcggcagagcgatcgcagcgctcgcgcggtgctgcc gtgccgcgcacgccgtcgccgatgctcgcgtcgacgcgctcgctcgccgacgtcggcgac ggatgggtgttcgagccgaagtgggacggatggcgcgcgctcgtgaccgtcgacggcgac gacgtgcggctgcggtcgcggtccggccagtcgctcacggacgggttctcggagctgctc gcgcccatccggcaggcggtgaccgcggagcgcgccatcgtcgacggtgagctcgtcgca ggcgctggcggcggcgacttctcctcgctgcagggccggcttggcgaccctcgcgcgcgt gggcgcgccgtcgaccgcggcgagcccgtggccctcgtgctcttcgacgcgctcgaggtc gacggacgctcgctcctgcgcctgccgctcgccgagcggcgcgaggagctcgagcgcatc gtcgtgccctccgatcgcgtcgcgatcaccgagcagctctcggggtcggcggcggcgatc gtcgaggcgtcgcagcggctcggcatcgaggggctcgtggccaagcgcctgtcgtcgacg tatcagccgggcgcgcgcagcgacgactggcgcaaggtcgtgcacgtgcgcacgcacgag gtcgcggtcgtcggatggctgcccggcgagggctcgctcggccgcaccttcggctcgctc gtgctggcggcgccggacgcggacgggcggctgcgctacgccggccgcgtcggcacgggc ttctcggcccgcgatcgcgcgacgatccgcgagcggctgcccgaccagacgcgcgcctcc cgcgccgtcgacgacgtgccgcccgacgtcgcgagggcgatgacgtggatgcgcgccgcc gtcggcgaggtgcgcttcactgcggtgacggaggcgggcgcattccgccagcccgtgtgg cgcggcctgcgccccgacaagtcgctcgacgacctgaccccgctccccgatcgctga

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