Arachidicoccus ginsenosidivorans: FSB73_10290
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Entry
FSB73_10290 CDS
T06150
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agi
Arachidicoccus ginsenosidivorans
Pathway
agi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FSB73_10290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agi03400
]
FSB73_10290 (mfd)
Enzymes [BR:
agi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FSB73_10290 (mfd)
DNA repair and recombination proteins [BR:
agi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FSB73_10290 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEC72003
UniProt:
A0A5B8VLC7
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All DBs
Position
complement(2576297..2579716)
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AA seq
1139 aa
AA seq
DB search
MNLQNLLGQYLDAPHLQPLVGRLTIAGTQHIFLKNLHGSAAAFVAASLFNHKDLSTFNHV
FVLNDSEDAAYFHNTLAGLTSALNIFYFPSSFKTKKNFRLLNASHVMLRTEALTRFSSPL
GARTGALVTYPEALFEKVVLPKTLSGNIIHIKANDTLKLESLMGLFIDYGFVRTDFVYEP
GQFALRGGILDIYSFGNDKPYRVELFGDEVDSIRLFDPETQLSERKLLQVSIIPNIETQF
EQEDKVSLLDFLPENTIYWIKDWDVISEQITRQYRDMEDFQQKIASGTKEAEVQDDPDDT
KILKEIKPQDFQDATALQTGLQKRSIIEFGYQRHFSDEVMDFQTREQPAFNRNFSLLIQD
LKTFEKNKYSIYLFSEQPRQLERLRSIFLDLQTEIQFTPIPTSIHEGFIDDDLKIVCYTD
HQIFQRYHKYHIKQAFNKNKALTLKTLRDLQPGDYVTHIDHGVGRYSGLQKLEVGGTLQE
AVRIIYKDNDILYVNINSLHKISKYTGKEGTQPKANKLGSDSWNKLKEKTKTRVKEIAFD
LIKLYAQRKAQSGFAFSPDNYMQTELEASFIYEDTPDQSKATADVKKDMESAAPMDRLIC
GDVGFGKTEIAVRAAFKAVVDGKQAAILVPTTILAFQHYKTFAERLADFPVTIDYINRFK
TAKEKKETLEKLATGKIDIIVGTHALLGKAVKFKDLGLMVIDEEQKFGVGHKEKLKTLRT
NVDSLTLTATPIPRTLQFSMMGARDLSIINTAPPNRQPIQTEVVTFNQDFIREAIYFEIE
RGGQVFFIFNRIQGVKEMSALIQTLCPDLSVSFAHGQMEGKELEEKIMDFVERKYDVLVC
TNIIESGVDIPNVNTIIVNNAHHFGLSDLHQLRGRVGRSNKKAFCYLIAPPMSTLPADSR
KRLQTLEQYSDLGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEIGFEMYQKVLQEAIRELK
RTDFKDLFKEEISQQDDYVADCTVDTDQEILIPDAYVESITERLALYTRLNNCADEEELQ
SFYQELIDRFGPIPRQVEDLFAVIRSRKLAISLGFEKMTLKDKVLRCYFINKNDSPYFDS
ALFKNILSYIQTGTNKARLKQAGTNFLLINNSVENVNQMWQFLQQIWDGVNSSRSQQKS
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaacttacaaaatttactaggtcaatacctggatgccccccacctgcaaccgttggta
gggcgcttaactattgccggaacccagcatatctttttaaaaaacctccatggctcagcg
gccgcttttgttgcggccagcttgtttaaccataaagatctctctacattcaatcatgtt
tttgtgttaaatgacagtgaagatgcggcgtattttcacaatacactggcaggtttgacc
agtgccctgaatatattttacttcccgtcttcttttaaaacaaaaaagaattttcggctg
ctcaatgcgtcacatgtaatgttacgcacagaggccctgacccggttttcatcacctttg
ggtgccagaaccggcgccctggtaacctatccggaagctttatttgagaaggttgtactg
ccaaaaacgctcagtgggaatattatacatatcaaagccaatgacaccttaaaactggag
tctctaatggggctgtttattgattatggttttgtacgcacagattttgtctatgagccg
gggcagtttgctttaaggggtggcattttggatatctattcattcggcaatgacaagcca
taccgtgtagaactatttggtgatgaagtagatagtattcgattatttgacccggaaacc
caactcagtgagcgcaaattattgcaggtttctattatcccgaatattgaaacacagttt
gaacaagaggataaggtatccctgttggactttttacccgaaaacaccatctactggatc
aaagactgggatgtgatctcggaacagattaccaggcaataccgggatatggaagatttt
cagcagaaaatagccagtggaaccaaggaagcagaggtgcaggatgaccctgacgatacc
aagattctaaaagagataaagcctcaagattttcaggatgccacggcactccaaacagga
ttgcaaaaaagatctattattgaatttggctatcagcgtcatttttctgacgaggttatg
gattttcagacaagggaacaaccggcatttaaccgcaattttagcctcttgatccaggac
cttaagacctttgaaaagaataaatattcaatctacctgttctctgagcagcctaggcaa
ctagagcggcttaggagtatctttttagatcttcagacggagattcagtttacgcctatt
cccacgagtatccacgaaggatttattgatgatgatttgaaaatagtttgctatacggat
caccagatttttcagcgctatcacaaataccacatcaaacaagcctttaataaaaataaa
gcactcaccttaaaaacactcagagacctccaaccaggtgattatgttacgcatattgat
catggggtcggtcgttatagtggactgcagaaacttgaagtagggggcaccctgcaagaa
gcggtcaggatcatttataaggataatgatattttatatgtaaatatcaattccctgcat
aagatctctaaatataccggcaaagaaggcactcagccaaaagccaataaattgggcagt
gattcctggaataaactcaaagagaaaaccaagaccagggtcaaggaaatcgcttttgat
ctgattaaattatatgcgcagcgtaaggcacaaagtggttttgcattctcgcctgacaac
tatatgcaaacggagctagaagccagcttcatttatgaggacactccggatcaaagcaaa
gccacggcggacgtcaaaaaggatatggaaagtgccgcacctatggacaggctgatatgc
ggagatgttggctttggtaaaaccgagattgcggtaagagccgctttcaaggcagtggtc
gacggcaagcaggcagccattttagtacccacgaccattttggcttttcagcactataaa
acctttgcagaacggctggctgattttccggtaaccatcgattacattaaccggtttaaa
acggccaaggaaaaaaaggaaaccctggaaaagctggccacaggcaaaatcgatatcatt
gttggtacccatgcactactgggcaaagctgtcaaatttaaagacctgggcctaatggtt
attgatgaagagcaaaagtttggtgtaggacataaggaaaaattaaaaacccttaggaca
aatgtagattcactcactcttacagctacgcctattccacgcaccctgcaatttagtatg
atgggtgccagagacctaagtatcatcaatacggcgccgcccaacaggcaacccatccag
acagaagtagttacatttaaccaggattttatacgggaagccatctattttgaaatagaa
agaggtggccaggtcttttttatttttaaccgaattcagggagtgaaggaaatgtcagcc
ctgatccagacgctttgccctgatttaagtgtatcctttgcgcacggtcaaatggaaggt
aaagagctggaagaaaagattatggacttcgtagaaagaaaatacgatgtgctggtctgc
accaatattattgaaagtggcgtggatatacccaatgtcaataccatcatcgtgaataat
gcccatcattttggcttaagtgatttacatcagttaagaggccgggtgggtagaagcaat
aaaaaagctttttgttatctgatcgcaccaccgatgagcaccctgcctgctgattcacgt
aaaaggttgcagaccctggaacaatacagtgatttaggaagtggttttcagatcgctatg
cgagatcttgatatccggggtgcaggtaatctgctgggaggcgaacaaagcggctttatg
gcagaaatcggctttgagatgtatcaaaaggtattacaggaagccatcagagagcttaaa
agaaccgactttaaggatttatttaaagaggagatctcccagcaagatgattatgttgct
gactgcaccgttgatacagatcaggaaatcctgattcctgacgcttatgtagaaagtatt
accgaaaggctggcactgtataccagacttaacaattgtgcggatgaagaggaacttcaa
agtttctatcaggaactcatagacaggtttggtcctattccaagacaagtggaagatctc
tttgccgttatcagaagcagaaaactggccatcagtcttggatttgagaaaatgaccctt
aaggacaaggtcttacgttgctattttatcaataaaaatgactccccttattttgacagc
gcgctattcaaaaacattttaagttatatacagacgggcaccaataaagcaaggcttaag
caagcaggcactaattttttactgattaataactcagtggaaaatgtcaatcaaatgtgg
cagtttttacagcagatttgggatggggtcaattccagtcgctcacaacaaaaatcataa
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