Akkermansia glycaniphila: PYTT_2070
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Entry
PYTT_2070 CDS
T04551
Name
(GenBank) mfd: transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agl
Akkermansia glycaniphila
Pathway
agl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PYTT_2070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agl03400
]
PYTT_2070
Enzymes [BR:
agl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYTT_2070
DNA repair and recombination proteins [BR:
agl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PYTT_2070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
SNF2-rel_dom
Glyco_tran_WecG
DNA_pol3_chi
UB2H
Motif
Other DBs
NCBI-ProteinID:
SEH95762
UniProt:
A0A1H6M3E0
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All DBs
Position
I:complement(2436790..2439987)
Genome browser
AA seq
1065 aa
AA seq
DB search
MIQELLARVARTAAFRRKLSVLGKENTRNTPVIFEQTPPAALSFLISLIASTAGPKQRIW
ILTPDLPRQERLAAELPIWKQGHTLFLPEQEIHINNGLSDPDLLAERLDILQKLSLPSEE
RQLVVLTETALMQDAPASSTIEEQTSYFSIGDTIEQNALIAMLTEAGFERSDQVIARGQW
SVRGGIVDVFPLQAPHPLRIELFGDTIESIRAFDIDSQLSFKKLKGAQLLLSEPPSKQKL
KNWISPDDWIISTPDCRESGNIVILETPPEDIPDAAELDRPQNNDKTAFYGTPLGSFDTG
DFVMQEAKRNYAHGQLEKWNRQAWEIAIFFPHPGEEKRFREICGNDPAWERVHHCQGELP
HGFTAPGAKLAVLSSSELFGRYTTPQARKRADREDAARRERAQTPLREILPGDLVIHASH
GLGKYIGIDKSPDTGEEEMYIEYRGGVKLGIPIRQSHLVSKYIGLGTKTPELSKLGDAKW
VRACKAAEKAVADYAAQLLEVQAERETNQGYAHPADSAWMWEFESSFPYRETPDQLRAIQ
QAKADMESPRPMDRLICGDVGFGKTEVAIRAAFKCITGGKQAAILVPTTVLADQHGRSFK
ARMSEYPVRIEILSRFTPAKKEKEILQGLANGSVDIVVGTHRLISKDIRFKNLGLVVIDE
EQRFGVRHKEQFKTNFRAVDMLTLSATPIPRTLYIALMGARDMSTIDTAPLNRLPVQTAV
CPYDEKLIKDAIERELKRGGQVFFLHNRVQTIDHMAHQLHQLVPKARIVIGHGQMDKSDL
ENVMGQFVRGEADILLSTTIIESGIDIPNANTIIIDRADRFGLADLYQLRGRVGRAGHRA
YAYLLLPRHALTTGDARKRVSAIKQYTELGSGFKIAMRDLEIRGAGNLLGTQQSGHIAAI
GFELYCQLLRQSIERLQGKTPTLRTDSTLKADFICWSEAKMTIQESRKGIIGTYLPSAYM
ESTRTRIAAYKDLANATHLNDLDQLQKHWIDRFGSLPAEAENLLQCQRIKLLASRANIAQ
VEIVGQKLMLTRNRDYILLEGRFPRLKKLHPVDKLREVLELLLTL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgatacaggaactccttgcccgcgtcgcacgcacagcggcatttcgccggaaattgtcc
gttctgggcaaggaaaacacgcgcaacactcctgtcatcttcgaacaaactcctccggcg
gcgctctccttcctcatctccctcatcgcctccactgccgggccgaaacagcgcatctgg
atactcacacccgacctcccccggcaggaacgcctcgcagccgaactccccatctggaaa
caaggccacacactcttcctccccgaacaggaaatccacatcaacaacggactctccgac
cccgacctcctcgccgaacgcctcgacatccttcaaaaactctccctgccctccgaagaa
cgacaactcgtcgtcctcacggaaaccgcactcatgcaggatgcccccgcctccagcacc
atcgaagaacaaacctcatacttcagcatcggcgacaccatcgagcaaaatgcgctcatc
gccatgctcaccgaagccggattcgaacgcagcgaccaggtcatcgcacgcgggcagtgg
tccgtccggggcggcatcgtcgacgtattcccgttgcaagccccccaccccctccgcatc
gaactcttcggcgacaccatcgaatccatccgagccttcgacatcgactcccagctatcc
ttcaaaaaactcaaaggagctcaactcctcctctccgaacctccgtccaaacaaaaactc
aaaaactggatcagccccgacgactggatcatctccacccccgactgccgggaaagcggc
aacatcgtcatcctcgaaacgcctccggaagacatacccgacgccgccgaactcgaccgc
ccgcaaaacaacgacaaaaccgccttctacggtaccccgctcggcagcttcgacaccggc
gacttcgtcatgcaggaggccaaacgcaactacgcgcacggccagcttgaaaaatggaac
aggcaggcatgggaaatcgccatcttctttccccatcccggagaagaaaaacgcttccgc
gaaatctgcggcaacgaccccgcatgggaacgcgttcaccactgccagggtgaactgccg
cacggcttcaccgccccgggagccaaactcgccgtcctctcctcctccgaactcttcggc
cgctacaccacgccacaggcccgcaaacgcgctgatcgcgaagacgccgcacgccgcgaa
cgcgcccaaacacccctccgcgaaatcctccccggcgacctcgtcatccacgcctcccac
ggcctcggcaaatacatcggcatcgacaaaagccccgacaccggcgaagaagaaatgtac
atcgaataccggggaggagtcaaactcggcatccccatccggcaatcacacctcgtctcc
aaatacatcggactcggcaccaaaacgcccgaactcagcaaactcggggacgccaaatgg
gtacgcgcctgcaaagccgccgaaaaagcagtcgccgactacgccgcccaactcctcgaa
gtacaggccgaacgcgaaaccaaccagggctacgcccacccggcagactccgcctggatg
tgggaattcgaatcctccttcccctaccgcgaaacgccggaccagctgcgagccatccag
caagccaaggcggacatggaatccccgcgccccatggaccgcctcatctgcggcgacgta
ggcttcggcaaaacggaagtcgccatccgcgccgccttcaaatgcatcacgggaggcaaa
caggccgccatcctcgtacccaccaccgtccttgccgaccagcacggccgcagcttcaaa
gcgcgcatgagcgaataccccgtacgcatcgaaatactcagccgcttcacccccgccaaa
aaagaaaaggaaatcctgcaaggcctcgccaacggctccgtcgacatcgtcgtcggcacc
caccgcctcatctccaaagacattcgcttcaaaaacctcggcctcgtcgtcatcgacgaa
gaacaacgcttcggcgttcggcacaaagaacaattcaaaacgaacttccgagccgtcgac
atgctcaccctctccgccacccccattccgcgcaccctctacatcgccctcatgggcgca
cgcgacatgagcaccatcgacaccgctcccctcaaccgcctccccgtacaaaccgccgtc
tgcccctacgacgaaaaactcatcaaagatgccatcgaacgcgaactcaaacgcggcgga
caggtcttcttcctccacaaccgcgtccaaaccatcgaccacatggctcaccaactccac
cagctcgtccccaaagcccgtatcgtcatcggccacggacaaatggacaaaagcgacctt
gaaaacgtcatggggcaattcgtacgcggagaagcggacatcctcctctccaccaccatc
atcgaaagcggcatcgacatccccaacgccaacaccatcatcatcgaccgcgccgaccgc
ttcggcctcgccgacctctaccagctccgaggccgcgtaggccgtgcaggccaccgcgcc
tacgcctacctcctcctcccgagacacgccctcaccaccggagacgcccgaaaacgcgtc
tccgccatcaaacaatacaccgaactcggctccggcttcaaaatcgccatgcgcgacctc
gaaatccgcggagccggcaacctcctcggcacccagcaaagcggccacatcgccgccata
ggcttcgaactatactgccagctcctccggcaatccatcgaacgcctccagggcaaaaca
cccaccctccgcaccgactccaccctcaaagccgacttcatctgctggagcgaagccaaa
atgaccatccaggaaagccgcaaaggcatcatcggcacctaccttccctcggcctacatg
gaatccacccgcacccgcattgcggcctacaaagaccttgccaacgccacccacctgaac
gacctcgaccaactccagaaacactggatcgaccgcttcggttctctccccgcagaagcc
gaaaacctcctgcaatgccagcgcatcaaactcctggcctcccgcgccaacatcgctcag
gtcgaaatcgtcggccaaaaactcatgctcacccgcaaccgcgactacatcctcctcgaa
ggccgcttcccccgcctcaaaaaactccaccccgtcgataaactgcgggaagtattggaa
ttgctgctcactctctaa
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