Agromyces badenianii: DCE93_01325
Help
Entry
DCE93_01325 CDS
T05411
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agm
Agromyces badenianii
Pathway
agm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DCE93_01325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agm03400
]
DCE93_01325
Enzymes [BR:
agm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DCE93_01325
DNA repair and recombination proteins [BR:
agm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DCE93_01325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AWB94479
UniProt:
A0A2S0WT17
LinkDB
All DBs
Position
282732..285197
Genome browser
AA seq
821 aa
AA seq
DB search
MAEGARQLVEVDGRRLRLTNLDKVMYPETGMTKGEVISYYAEIAPVMVPLVAGRPVTRKR
WVHGVGTADAPETAFFEKNLAEHAPEWVRRGIQHHSDGDKAYPIAGDRATLVWLAQQAAL
ELHVPQWRFDARGEPAGPDRMVFDLDPGEGMGLAECAEVARHVRALLEGMGLEAIPVTSG
SKGIHLYAALDGSQTSDQVSAVAHELARALEADHPELIVSSMRKTLRTGRVLIDWSQNNG
KKTTIAPYSLRGRSRPTVAAPRTWHELEAPDLRQLEASDVLARVAESGDPMGTFTEHSHA
GPLSAYLSMRTSGATPEPMPASAWGQVSGGPPSGSGPRFVIQEHHARRLHYDLRLERDGV
MKSWAVPKGVPETSGTNHLAVQTEDHPMEYATFEGTIPRGEYGAGSMTIWDTGVYAAEKW
RDDEIIIDLDGQAGGPLGGPARLALIRTDGQGEKSSWLLHRMKDQAPGAARAAAAASADG
GAGDLDARPPATGAPRPAGRVGPISQRPMLATAASLGMLTGEEWALEWKWDGIRVLARVE
AGGMRLLSRNGVDITARYPDLASLPSVVRGDAVVDGEIVALDTDGRPDFGRLQRRMNLTK
PREIERVAASVPVRLLLFDVLEVDGRPVTDEPYRQRRARLAGLMRMKRGVPVEVPAPATG
TPEEALAESRRLGLEGIVAKRPDSPYRPGARSSDWLKHKLTLTQEVVIGGYRRGAGTRTG
RIRSLLVGIPGDRGLEYAGRVGSGLGELALERLLAALRPLEQAESPFVEVPAADMSDAVW
VRPELVGEIELSDWTSTGVARHPRWRGLRPDKAPAEVERET
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggctgagggcgcgcggcagctcgtcgaggtcgatggccgacgcctgcggctgacgaac
ctcgacaaggtcatgtatcccgagacgggcatgacgaagggcgaggtgatctcgtactac
gccgagatcgcccccgtcatggtgcctctcgtcgccgggcgtccggtcacgcgcaaacgc
tgggtgcacggcgtcggcacggcggatgccccggagacggcgttcttcgagaagaacctc
gccgagcatgcacccgagtgggtgcgccgaggcatccagcaccactccgacggcgacaag
gcgtacccgatcgccggcgatcgggcgacgctcgtgtggctggcccagcaggccgccctc
gagttgcacgtaccgcaatggcggttcgacgcccgcggggagccggcgggccccgaccgg
atggtcttcgacctcgaccccggtgagggcatgggcctcgccgagtgcgcagaggtcgct
cgccacgtgcgcgccctcctcgagggaatgggcctcgaggcgatccccgtgacgagcggc
agcaagggcatccacctctacgcggcgctcgacggctcgcagacctccgaccaggtgtcg
gcggtcgcgcacgaactcgcgagggcgctcgaggccgaccaccccgagctcatcgtctcg
agcatgcgcaagacgctgcgcacggggcgcgtgctcatcgactggagtcagaacaacggc
aagaagacgacgatcgcgccgtactccctccgcgggcggtcgcgcccgacggtcgcggcg
ccgcgcacctggcacgagctcgaggcccccgatctccgtcagctcgaggcatccgacgtg
ctcgcccgcgtcgcggagtcgggcgacccgatggggacgttcaccgagcactcgcacgcc
ggcccactctcggcgtacctctcgatgcgcacgagcggcgccactcccgaacccatgccc
gcctcggcgtggggacaggtcagtggcggaccgccgagcggcagcgggccgcgtttcgtg
attcaggagcatcacgcgcggcgcctgcactacgacctgcgactcgagcgagacggcgtc
atgaagagctgggccgtgccgaagggagtgcccgagacctccggcacgaaccacctcgcc
gtgcagaccgaagaccacccgatggagtatgcgacgttcgagggcacgatcccgaggggg
gagtacggcgcgggctcgatgacgatctgggacacgggcgtctacgccgccgagaagtgg
cgcgacgacgagatcatcatcgacctcgacgggcaggcgggcggcccgctgggtggaccg
gcgcgactcgcactcatccgcaccgacgggcagggcgagaagagctcgtggctgctgcat
cggatgaaggatcaggctccgggcgcggctcgagcggcggcggcggcatcggcggatggc
ggcgccggcgacctcgatgcgcgccctcctgcgacgggcgctcctcgaccagcggggagg
gtcggcccgatctcgcagcgtccgatgctcgcgaccgccgcctcactcggcatgctcacg
ggcgaggagtgggcgctcgagtggaagtgggacggcatccgggtgctcgcccgcgtcgaa
gcgggcggcatgcggctgctcagccgcaacggagtcgacatcaccgcccgctaccccgac
ctcgcctcccttccgtccgtcgtgcgcggtgatgcggtcgtcgacggcgagatcgtcgcg
ctcgacaccgatggccgccccgacttcggtcgcctgcagcgccggatgaacctcaccaag
ccgcgcgagatcgaacgggtcgcggcatccgtgcccgtgcgcctgctgctgttcgacgtg
ctcgaggtcgacggccggccggtcaccgacgagccctaccgccagcgccgggcccgactc
gcaggcctcatgcggatgaagcgcggtgtgccggtcgaggtgccggcgccggcgaccggc
acccccgaggaggcgctcgcggagagtcgacggctcggcctcgagggcatcgtcgcgaag
cggcccgactccccgtatcggcccggcgcccgcagctccgactggctcaagcacaagctc
acgctcacgcaggaggtcgtgatcggcggctatcggcgcggcgctggcacgcgcaccggc
cgcatccgctcgctgctcgtcggcatccccggagatcgcgggctcgagtacgccgggcgc
gtcggctcgggactcggcgagctcgccctcgagcggctgctcgcggccctgcggccgctc
gaacaggccgaatccccattcgtcgaggtgcccgcagccgacatgagcgacgccgtctgg
gttcgccccgagctcgtcggcgagatcgagctcagcgactggacgagcaccggcgtcgcg
cggcatccgcgctggcggggcctgcggcccgacaaggcgccggccgaggtcgagcgcgag
acctga
DBGET
integrated database retrieval system