Agrobacterium tumefaciens H13-3: AGROH133_14508
Help
Entry
AGROH133_14508 CDS
T01432
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AGROH133_14508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_14508
Enzymes [BR:
agr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGROH133_14508
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AGROH133_14508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADY67916
LinkDB
All DBs
Position
pAspH13-3a:197700..200363
Genome browser
AA seq
887 aa
AA seq
DB search
MSDNLSTYRGKRDFKKTAEPSGQAKVSASNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTRGPSLDPGDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKTPEE
ALAKGDFKFTLEGDRLHGSFVLVRMRHDRDGGKRTNWLLIKHHDEFSVEENGAAVLEEND
TSVASGRTMEAIASGKGKKPKPFMLQSGALEADAVWDSNHGLAAEERKAGSKTAAKSAKK
PAAAKRAKSSMPDFVAPQLCETLSRPPSANGWIHEIKFDGYRIQMRVEDGEVTLKTRKGL
DWTAKWSAIAASASKLPDCIIDGEICALDENGAPDFAALQSALSEGKTGDLVFFAFDLLF
AGNEDLRELPLTKRKETLEGFLSDAGGDPLLRFVEHFETGGDAVLKSACRLSLEGIVSKK
ANAPYRSGRTETWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVNRGNHFVYVGRVGTGYG
AKVVEGLLPKLQEMETPKSPFTGIGAPKKSSDIVWLKPELVAEIEFAGWTGDGQVRQAAF
KGLREDKPAEEVEAEKPASPVENEVLDPETDKPAPRKFGKGAKVEVMGVMISSPDKPLWP
DAGDKEPVTKLDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLL
ELVTVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNQPEVPGRLVFDLDPGPDVEF
STVVEAAREIRDRLEDLGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWDEAKGFAHDVCQD
MARDNPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWSQVKT
DLDPKRFTIRTVPELLKKSTAWQDYCDGQRPLEQAIKRLAKSRKAAA
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaatctctcaacttaccgcggcaagcgtgatttcaaaaagaccgccgaaccc
agcggacaggcgaaggtcagtgcgtcaaaccgtcgtcggttcgtgatccagaagcatgac
gcgacgcggctgcactacgaccttcggctggagctggacggagtgttcaagtcttgggct
gtgacaagaggtccctctctcgatccgggcgacaagcgccttgcggttgaagtggaagat
catccgctcgactacggagattttgaaggcacgatccccaaaggccagtacggcggcggg
acggtcatgctttgggatcgcggctattgggagccggagggaaagaagacgccggaagag
gcgctcgccaagggtgatttcaagttcacgcttgagggcgatcggctccatggcagcttc
gtgctcgtccgcatgcggcatgatcgcgatggcggcaaacgcacaaattggctgctgatc
aagcatcatgacgagttttcggtcgaagagaacggggccgcggttcttgaggagaacgat
acatcggtagcgtccggccggacaatggaagctatcgcatccggcaaaggtaaaaagcca
aaacccttcatgctgcagagcggcgcgctcgaagcggatgcggtgtgggacagcaatcac
ggtcttgctgccgaagagcgcaaggccgggtcaaagacagccgccaagtcagcgaagaag
cccgccgccgccaaacgcgccaaatcctcgatgccggactttgtcgcgccgcagctttgc
gagacgctgtcgcgtccgccatctgcaaatggctggatccatgaaatcaagttcgacggt
tatcgcatccagatgcgggttgaagacggtgaggtcaccctgaagacccgcaagggcctg
gactggaccgcgaaatggtctgcgattgctgcgtcggcatccaagcttcccgattgcatc
attgatggtgagatctgtgcccttgacgaaaacggcgcgcctgattttgctgccctgcaa
tcggcgctatcggaaggcaagaccggcgacctcgtctttttcgccttcgatctgcttttt
gccgggaacgaagaccttcgggagcttcctttgaccaagcgaaaggagacgcttgaaggc
tttctctcggatgcggggggcgatcctcttctccgcttcgtcgagcattttgagaccgga
ggcgatgcggtgctgaagtctgcttgccgcctgtctctggaaggcatcgtctcaaaaaag
gccaacgcgccctataggtctggccgcaccgagacctgggccaagtcgaaatgccgcgcc
ggccatgaagtggttatcggcgcctatgccaagaccaacggcaagttccgatcgctgctg
gtcggcgttaatcgcggtaaccacttcgtctatgtcggccgggtcggcacggggtatggc
gcaaaggtcgtcgaggggctcttgccgaagctgcaggagatggagaccccgaagtcacca
ttcacaggcatcggtgcgccgaagaaatcttccgacatcgtctggctcaaacccgaattg
gtcgccgaaatcgagttcgctggctggacgggtgatggccaggttcgacaggcggcgttc
aagggcttgcgggaagacaagccggctgaggaggtggaggctgagaagccggcgtccccg
gtcgaaaacgaagtactggatccagaaactgacaagccggcgccacggaagtttggcaag
ggcgcgaaggtggaggtgatgggcgttatgatctcgagtcccgacaagccgctttggccg
gatgccggtgacaaggaaccggtgaccaagctcgacctggcccgatatcatgaagcggtg
gggccatggttgatcgaccatatcaagggccgaccctgctcgatcatccgaaccccagac
gggattggcggtgagcagttcttccagcgtcatgccatgccggggacatccaacctgctt
gagctcgtcaccgtctttggcgacaagaagccctatctgcagattgatcgtgtcgaggga
ctggctgcgattgcccagatcggcggggtcgagcttcatccctggaactgcgagcccaac
cagccggaagtgccgggacggctggtcttcgaccttgatcctggtccggatgttgaattc
tccaccgtcgtcgaggccgcacgagaaatccgtgaccgcctagaagacctggggcttgtc
agcttctgcaagacgaccggaggaaagggcctgcatgtcgtcacgcccttggccgtgccg
aagggcaagaaactcagctgggatgaggcgaaaggcttcgcgcacgacgtctgtcaggat
atggcgcgcgacaatccagagctctacctcatcaagatggccaagaaccaacgcaatggc
cgcatcttcctagactatttgcgcaacgaccggatggcgacggcggtcgcgccattgtcg
ccgcgcgcacgtccgggcgcaaccgtatcgatgccgctcaactggagccaggtgaaaacg
gacctggatcccaaacggttcacgatccgcactgtgcccgagctgttgaagaagagcacg
gcatggcaagattactgtgacgggcaaagacctctggaacaggccatcaagcggctggca
aaatcgcgaaaggcggcggcttga
DBGET
integrated database retrieval system
