Actinomadura graeca: AGRA3207_005690
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Entry
AGRA3207_005690 CDS
T07938
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agra
Actinomadura graeca
Pathway
agra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AGRA3207_005690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agra03400
]
AGRA3207_005690 (mfd)
Enzymes [BR:
agra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AGRA3207_005690 (mfd)
DNA repair and recombination proteins [BR:
agra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AGRA3207_005690 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QXJ24377
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All DBs
Position
6449086..6452619
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AA seq
1177 aa
AA seq
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MTLNGLVDLACTDPGLARALERARTDHEVVAPPALWPILAAALSRATGAPAGRRGVVLAV
TATGREAEDLTAALSSLLDPGRVAHFPAWETLPHEKLSPRSDTVGQRLAVLRRLVHPGAG
DPAREAGAGPGRGGGLDVVVTPIRAVLQPIVSGLADLEPVRLSSGEDAEMDDAVRRLVDA
GYHRVDLVEKRGEIAVRGGILDVFPPTEEHPLRVEFWGDTVEEIRYFKAADQRSLEVARD
GLWAPPCRELPLTEEVRGRARRLASEHPALEEILGRIADGDTVEGMEAFSPVLAESMELL
TDLLPEGSVLLVCEPERIRTRAVELVRTSQEFLEASWVNAAAGGEAPIDLGAAAFRTLED
VRAHSVELGLPRWSVTALNPEGDALNLGVQPAEAYRGDTSRVVGDVKGWIDGGWHVVMVT
AGHGPAERLVQLMGEEGLGARLADLPGPPEPSLVTVATGLLENGFAWESAKLAVLTETDL
SGQRSSTKDMRRMPSRRRGGIDPLQLKPGDYVVHEQHGVGRYVEMVSRTVQGATREYLIL
EYAKSDRLFVPTDQLEELTRYVGGEAPSLHRLGGADWQKAKSRARRAVKQIAGELIRLYS
ARMASPGHPFGADTPWQRELEDAFPYVETPDQLAAIDEVKGDMEKPVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLSTFSERFGPFPVVVKPMSRFQTDGEIG
ETLRGLSEGAVDVVVGTHRILSSQTRFKNLGLVIIDEEQRFGVEHKEELKRLRTQVDVLA
MSATPIPRTLEMGLTGIREMSTILTPPEERHPVLTFVGPYEEKQIAAAIRRELLREGQVF
FVHNRVRSIDKVAANLAKLVPEARVAVAHGQMNEHELERVMVDFWEKNYDVLVATTIVES
GLDVPNANTLIVDRADMYGLSQLHQLRGRVGRGRERAYAYFLYQPEQPLTETAHERLATL
AQHTEVGAGMYVAMKDLEIRGAGNILGAEQSGHVAGVGFDLYVRMVGEAVRELKEGGGEP
EAVETKVELPVDAHLPHEYVPGERLRLDAYRRIAAITSEDEIEGVHEELKDRFGPLPVPV
LNLLEVARFRAKARRAGLTDVTLQGTFVKFTPVSLPDSKQVRLQRLYPKSILKPATDTLL
VPAPKTAPLGGRPLRDQELLAWATDLVEALFLEPVRV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcaacggacttgtcgaccttgcgtgcaccgaccccgggctggcgcgcgcgctg
gagcgcgcgcggaccgaccacgaggtcgtcgcgccgcccgcactgtggccgatcctggcc
gcggcgctgagccgtgccacgggcgccccggcggggcggcgcggcgtggtgctcgcggtc
accgcgacgggccgcgaggccgaagacctcaccgcggcgctgtcgagcctgctcgacccc
ggccgcgtggcgcacttcccggcgtgggagacgcttccgcacgagaagctgtcgccgcgc
tcggacaccgtcgggcagcggctcgcggtgctgcggcggctcgtccaccccggcgccggg
gacccggcccgcgaggcgggggcgggccccgggcggggcggcggcctggacgtggtcgtg
acgccgatccgggcggtgctccagccgatcgtgtccgggctggccgacctggagccggtg
cggctgtcctcgggcgaggacgccgagatggacgacgccgtccggcggctggtggacgcc
ggctaccaccgcgtcgacctggtggagaagcgcggcgagatcgcggtgcgcggcgggatc
ctggacgtgttcccgcccaccgaggagcatccgctgcgggtggagttctggggcgacacc
gtcgaggagatccgctacttcaaggcggcggaccagcgctccctcgaagtggcgcgggac
gggctgtgggctccgccgtgccgggagctgccgctgaccgaggaggtgcgcgggcgcgcc
cggcggctggcgtccgagcatccggcgctggaggagatcctcggccggatcgccgacggg
gacaccgtcgaggggatggaggcgttctcgcccgtcctcgccgagagcatggagctgctg
accgacctgctgcccgaggggtcggtgctgctggtctgcgagccggagcggatccggacc
cgcgcggtcgagctcgtccggacgagccaggagttcctggaggcgagctgggtcaacgcg
gccgccggaggcgaggcgcccatcgacctgggcgccgccgcgttccggacgctggaggac
gtccgcgcccacagcgtggagctgggcctgccccgctggagcgtgacagccctcaacccg
gaaggggacgccctcaacctgggggtccagcccgctgaggcgtaccggggcgacacctcc
cgcgtggtcggggacgtcaagggctggatcgacggcggctggcacgtcgtgatggtcacc
gccgggcacgggcccgcggagcggctcgtccagctcatgggggaggagggcctcggcgcg
cggctcgccgacctcccggggccgccggagccgtcgctggtcaccgtcgcgaccgggctg
ctggagaacggcttcgcgtgggagtcggccaagctcgcggtgctgaccgagacggacctg
tcggggcagcggtcctcgaccaaggacatgcggcggatgccgtcgcggcggcgcggcggc
atcgacccgctccagctcaagccgggcgactacgtcgtccacgagcagcacggcgtgggc
cggtacgtggagatggtcagccggacggtgcagggcgccacccgcgagtacctgatcctg
gagtacgccaagagcgaccggctgttcgtcccgaccgaccagctggaggagctgacccgc
tacgtcggcggcgaggcgccgagcctgcaccggctcggcggcgccgactggcagaaggcc
aagtcccgggcccgcagggcggtcaagcagatcgcgggggagctgatccggctgtactcg
gcgcggatggcgagccccgggcacccgttcggcgccgacaccccgtggcagcgggaactg
gaggacgccttcccctacgtggagacgcccgaccagctcgccgccatcgacgaggtgaag
ggcgacatggagaagcccgtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtgcgggcggcgttcaaggccgtccaggacggcaagcaggtcgcg
gtgctcgtcccgacgacgctgctcgtccagcagcacctgtccacgttctccgagcggttc
gggcccttccccgtcgtggtgaagccgatgagccggttccagaccgacggcgagatcggc
gagacgctgcgcgggctgtcggagggcgcggtggacgtggtggtggggacgcaccgcatc
ctgtcgtcgcagacccggttcaagaacctcggcctggtgatcatcgacgaggagcagcgg
ttcggcgtcgagcacaaggaggagctgaagcggctgcggacgcaggtggacgtgctcgcc
atgtccgcgacgccgatcccgcggacgctggagatggggctcaccgggatccgggagatg
tcgacgatcctcaccccgcccgaggagcggcaccccgtcctgacgttcgtcgggccttac
gaggagaagcagatcgccgcggcgatccggcgggagctgctgcgcgagggccaggtgttc
ttcgtgcacaaccgggtccggtcgatcgacaaggtcgcggcgaacctggcgaagctcgtc
ccggaggcgcgcgtcgcggtcgcgcacggccagatgaacgagcacgagctggaacgcgtc
atggtcgacttctgggagaagaactatgacgtcctggtcgcgaccacgatcgtggagtcc
gggctggacgtgccgaacgccaacacgctgatcgtcgaccgcgccgacatgtacgggctg
tcgcagctccaccagctgcgggggcgggtcggccgcgggcgggagcgcgcgtacgcctat
ttcctgtaccagccggagcagccgctgaccgagaccgcgcacgagcggctcgcgacgctg
gcgcagcataccgaggtcggtgcggggatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacatcctcggcgccgagcagtccgggcacgtggccggagtcgggttcgac
ctctatgtacggatggtgggggaggccgtccgggagctgaaggagggcggcggcgagccg
gaggccgtcgagaccaaggtcgagctgcccgtggacgcgcacctgccgcacgagtacgtg
ccgggggagcggctccgcctggacgcctaccgccgtatcgccgccatcacgtccgaggac
gagatcgagggcgtgcacgaggagctgaaggaccgcttcgggccgctgcccgtgcccgtc
ctgaacctgcttgaggtggcgcggttccgcgccaaggcccgccgggcggggctcaccgac
gtcaccctccagggcacgttcgtcaagttcacgcccgtgagcctgcccgactccaagcag
gtcaggttgcagcgcctgtacccgaagagcatcctcaaaccggcgacggacacgctgctg
gtgccggcgccgaagaccgcgccgctcggcggccgccccctgcgcgaccaggagctgctg
gcgtgggcgaccgacctggtggaggcactgttcctcgaaccggtccgcgtctag
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