Anthonomus grandis grandis (boll weevil): 126736107
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Entry
126736107 CDS
T08911
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
agrg
Anthonomus grandis grandis (boll weevil)
Pathway
agrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126736107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrg03019
]
126736107
Enzymes [BR:
agrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126736107
Messenger RNA biogenesis [BR:
agrg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126736107
mRNA degradation factors
3'-5' decay
Ski complex
126736107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
ResIII
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126736107
NCBI-ProteinID:
XP_050296280
EnsemblRapid:
ENSAGSG00005002238
LinkDB
All DBs
Position
5:37563237..37585111
Genome browser
AA seq
1195 aa
AA seq
DB search
MYHPDLPGIFDDVKVELEKYVLCPENLPIHKYEKNQQFWPREAEILELLHFDEAPVSTTL
RVQRDLDTGEIVEFREVSIESVGADASNSMSFTRAPAPPSEMVRGSTSYVPFQPGSFPEP
VLDLPKRNTLLDTTELLTVPPGFERGLIFAGDGYTLLEDDGKKSSLGLEEPKSKINLLEL
IEKEQDFLGEWEIEKKSLANKELKEDTELLPEEEEILPKEPRILNLSSLPPTSLSNTSEW
AVLLDPNQPVTDFEKKIPDMAKKFPFELDNFQKLAILQLEKHNHVFVAAHTSAGKTAVAE
YAIALSQKHMTRTIYTSPIKALSNQKYRDFKDEFKDVGLITGDFQINQKASCLIMTTEIL
RSMLYCGSDITRDIEYVIFDEVHYINDRERGHVWEQVLIMLPKEVCVVLLSATVPNTIEF
ADWLGRTHKRKVYVITTTKRPVPLQHFLYTGRWGGSRHNKFMVLDAEKWLTEGYHKAKAA
LEPLKDQNTKFMIKQEKTLWSSLVDHLQKFELLPVVAFIFSRQKCDNNADILTNLDLTSQ
QEKSQIVVFFNKCIRSLKEPDRNIPQIVKMKNILTRGIGVHHSGVLPIVKEIVEMLFQKG
LIKILFATETFAMGVNMPARTVIFDSIRKHDGMELRNLLPAEYIQMAGRAGRRGKDERGT
VLILCKTSVPREAELKDMMTGRPNKLVSQFRITYGMVLSLLRVESLTVEQMLSKSFGEAD
HPSHVANWESDLKETERQLEELTKQQLSSYLQPLVQFFECASAYLSIRKEIMPQVLNYPK
VQKLLTSGAVILINHQYHINKLALILSKKTSGYRVLILTDSKEPETNKVDLWYQMLALAQ
EKLFMPSGKLGHQVLTIPPSDIYEITSKTIKIDAKLVESDWEKRQQERFKYDPPGKTCSQ
AIQELEKLTLQANENQQKLEFQHFIIDLKVNEQSLYHSLETMYRFKDKLIDHLPCTKIPN
FEQQFATVFERKFLEEKKKDLEFKLSGASLMLYPDYQNRIMLLRQLGYVDSQNTVKLKGN
VARAMGMNELLITELVVDDIFVDLTPAEVAALLSSLVFRVKLRGDQNSYEEELTPRLKEG
IRVINQVHHKIANMELELGIQTEEFMNDLNFGLVHVVYRWANAEPFVEIMKLTDIQEGII
VRCIQQLNETIMDVRDAAKIIGNPALQTKMEAASNAIKRDIVFAESLYMQEEKLV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtatcacccggacctaccaggcatatttgacgacgtaaaagtagaattggaaaaatac
gtgttgtgcccggaaaatctccccattcataagtatgaaaaaaaccagcagttttggccc
cgagaggctgaaatattagaactgctgcattttgatgaggctcccgtatcgaccacccta
agagtgcaaagagacttggatacaggtgaaatagtggagttccgagaagtttctattgag
tcagtcggggcagatgcctcaaattcaatgtcatttactagggcacctgcacctccttct
gaaatggttaggggcagtacttcttatgtcccctttcagcctggcagttttcctgaacca
gtgctagacttgcctaagaggaatactttattagataccactgaattgcttacggttcct
cctggttttgaaagaggactaatttttgctggagacggttatactttgttagaagatgac
ggaaagaaaagctcattggggctggaggagcctaaaagcaaaataaaccttttagaactt
attgaaaaagagcaagatttccttggcgaatgggaaattgagaaaaagtctcttgcaaat
aaagaacttaaagaggatactgaacttttacctgaagaggaagaaattctaccgaaagag
cctagaattttaaatctgtcatctttaccacccacaagtctgtcgaatactagtgaatgg
gcagtgttgctcgaccccaaccagcccgtcacagattttgaaaagaaaattccagatatg
gccaaaaagttccctttcgagttggacaattttcaaaaactggccattttacaactggag
aaacataatcacgtgtttgtggcggcccacacatctgccggaaaaactgctgtggccgag
tacgctatagctttatcacaaaaacatatgactcgcaccatatatacttcacctattaag
gccttatccaaccaaaagtatcgagatttcaaggatgagtttaaggacgtcgggctgatc
actggtgatttccaaataaaccagaaggcctcctgtcttataatgaccacggaaatattg
agatctatgttatactgcggtagtgacatcaccagggatatagagtatgtcatttttgat
gaggtacattacatcaacgatagagaaaggggtcacgtatgggaacaggtgctcataatg
ctccccaaggaggtctgtgtggtcctattgagtgccacagtaccaaacaccatcgaattc
gccgactggctgggcaggacccataaaaggaaagtttacgtgataaccaccacgaaaaga
ccggtgcctctacagcatttcctttataccggccgttggggtggcagcagacacaacaaa
tttatggttctagatgctgaaaagtggctcaccgaaggttatcataaggccaaggccgcc
ctggagccccttaaagaccagaacacgaaattcatgatcaaacaggagaaaacgttatgg
agcagcctggtggatcatctgcaaaagttcgagctgttgccggtggtcgctttcatattt
tcgcgacagaaatgcgacaataacgccgacatcttgaccaacttggacctgacgtcgcaa
caagaaaagtcccagatcgtggtgtttttcaataagtgtatcaggtccttaaaagaaccg
gataggaacataccgcagatagtaaaaatgaagaacattttaaccaggggcatcggggta
catcacagcggggtgctgcctatagtaaaggaaatcgtggagatgcttttccagaaagga
ctcattaagatcctttttgccacagaaactttcgccatgggggtcaatatgcccgccaga
accgtcatcttcgactccattaggaaacacgacggaatggaactgagaaacttactgccc
gcggaatatattcaaatggctggtagggcaggtagacgtggtaaagacgagcgcggaact
gtactaatcctgtgcaaaacgtccgtgccccgtgaggcagaattgaaagacatgatgacc
ggaagacccaataaactcgtgagccaattcaggatcacttatggaatggttctgagtttg
ttgagggtcgaatctttaacggtggagcaaatgctgtccaaaagtttcggagaggcggat
catccgagccacgtggccaactgggagtcggatttaaaggaaaccgagagacaattggag
gagctgaccaaacagcagctgagcagctacttgcaaccgctggtgcagtttttcgagtgt
gccagcgcttatttgagcatcaggaaggaaattatgccccaagtattaaactaccccaag
gtacaaaagttattaacctcaggggccgtcatactaataaaccaccagtaccacataaac
aaactggcactgatcctgtccaagaagacgtccggctatagggtactcattctaaccgac
tcaaaagaacccgagacaaacaaagtagatctgtggtaccaaatgttggcgctggcacaa
gaaaaactgttcatgccctcaggcaaactgggccatcaagttttaacgattcccccgtcg
gacatttacgaaatcacctcgaaaacgataaaaatcgacgcgaaactggtggagtccgat
tgggaaaagaggcaacaggagaggttcaaatatgatccacctgggaaaacgtgctcccaa
gcgatacaagaactagaaaaactcaccctccaagccaacgagaaccaacagaaattagaa
ttccaacatttcatcatcgatctgaaggttaacgagcagagtttgtatcactccttggaa
actatgtatcgttttaaggataaactgatcgatcacttgccctgcaccaaaatcccgaat
tttgaacaacagtttgccacagtgttcgagaggaaattcctcgaagaaaaaaagaaagat
ttggaatttaagctttcaggggccagtttaatgctgtacccggattatcaaaaccgcatt
atgttactgaggcaattggggtacgtggactcgcaaaatacagtgaaactaaaaggcaac
gtggcgagggcgatgggcatgaacgaactgctgatcacagaactcgtagtggacgacatc
ttcgtcgatctcactccggcagaggtggcggccctcttgtcctcgctagttttccgggta
aaactccggggggaccagaactcttacgaggaagaactcacccctagattaaaagaagga
atccgagtaataaaccaggtgcaccataaaatagccaacatggaactagaactgggcatc
caaaccgaggagttcatgaacgacctaaacttcgggctggttcatgtggtttatcgttgg
gcaaatgccgagccttttgtggaaataatgaaactgaccgatattcaggaggggatcatc
gtacgttgcatacagcaactgaacgagacaattatggacgtgagagacgcagcgaaaatt
atagggaatcccgcgttacaaacgaaaatggaggcggcctctaatgccattaaaagggac
atcgtcttcgctgaaagtttgtatatgcaggaagagaagttagtgtaa
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integrated database retrieval system
