Aphis gossypii (cotton aphid): 114124969
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Entry
114124969 CDS
T05869
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114124969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ags03021
]
114124969
03019 Messenger RNA biogenesis [BR:
ags03019
]
114124969
Transcription machinery [BR:
ags03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
114124969
RNA polymerase I system
114124969
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
114124969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
Spt5-NGN
Spt5_N
CTD
DUF3912
DUF5847
Presenilin
TLP-20
Motif
Other DBs
NCBI-GeneID:
114124969
NCBI-ProteinID:
XP_027844233
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MSKQPLLNILGIMTKLNRLIDISNLPIGVFSIVIYSNRIIFKNNRLLQKTEMSENDSESD
LEENPRYHERTLSRSTSRSHSPSGSEAEENNQEEVADEQGPEDENINSEDEYDEDDRPAK
KKKKNERFGGFIIDEADVDDEIEEDDDWEDGAGEYGIVANEVDELGPTAREIEGRRRGTN
LWDTQNEDEIEEYLRKKYADSSATIKQFGDVGDDMSDEIIQQTLLPGVKDPNLWMVKCRV
GDEKNTALLLMRKFFAYQFTDNPLKIKSIVSPESVKGYIYIESYKQTHVKSAIENISSLK
MGFWKQLMVPIKEMTDVLKVVKVQTGLRSKQWVRLKKGLYKDDIAQIDYVDLAQNQVHLK
LLPRIDYTRPRGALKVSMDLEALKRKKKRRPAAKLFDPEAIRAIGGEVTSDGDFLIFEGN
RYSRKGFLYKNFYMNAIITEGVKPTLIEIEIFEDFPEGVDIELTLSNKDNLTNSQTLCSG
DNVEVCAGELINLQGKVLSIDGDTVLIMPKHDNLNVPLEFMANELCKFFKQGDHVRVVGG
RFEGDTGLIVRVEQNRIVLFSDVTMHELEVLPRDLQLCTDTATGVDSLGQFQWGDLVQLD
PQNVGVIVRIEREKMHILNMAGKLVEAKPQSLNKKKEHRNTVGIDGLGNSIQRNEIVKVI
DGPHTGLHGEIKHLYRHFAFLYSRLMTDNGGIFVCRLRHIALAGSIKNKLAKSTIQNGFS
SPQAVSPRRSDFGQFGTKVSVGIGEETFMGIGGKFGGVRRDIRLIGQTIRITVGPYKGAV
GIVKDATECTARVELHSSCQTISVDRRNITIIVQPSNDRRLTSSYSRTPVNALTTPGYRE
GGKTPVHGLMTPNYEVGNRTPHFGNMTPSHDGSKTPTNAWDPSSGYTPARITYEDLEYPL
DSDASYGQSPNTLYSSSVQSYSPYQEISLSGCNSINSFINTPSPIDTDSPRSFYPASSPL
VEEYLKDQISKS
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaaccgctactcaacatcctcggcataatgacaaaattaaataggttaatc
gacatctctaatttgcctattggtgtatttagtattgtaatttatagtaatcgtattatt
tttaaaaataatcgtctacttcagaagacagaaatgtcggaaaacgattctgagagcgat
cttgaagaaaatccacgatatcatgaacggacattgagtcgtagtacaagtagaagccat
tcaccaagtggatccgaagctgaagaaaataatcaggaggaagttgctgatgaacaagga
ccagaagacgagaatataaattctgaagatgaatatgatgaagatgaccgtccagctaag
aaaaaaaagaaaaatgaacgttttggtggtttcatcattgatgaagccgatgtagatgat
gaaatagaagaagatgatgattgggaagatggagctggtgaatatggtattgttgctaat
gaggttgatgaattaggaccaactgcaagagaaattgaaggacgtagacgtggaactaat
ctttgggacactcaaaatgaagatgaaattgaagaatacttacgtaaaaaatatgcagat
tcttcagctacaataaaacaatttggagatgttggagatgatatgtcagatgaaattata
caacaaactcttttacctggcgtcaaagacccaaacttatggatggttaaatgtcgtgtt
ggtgatgaaaaaaatactgctttactgttaatgcgaaagttttttgcataccagtttaca
gacaatccattgaaaatcaaatctatagtttctcctgaaagcgttaaaggctacatatat
attgaatcatataaacaaacccatgtgaaatcagccattgaaaatattagcagtcttaaa
atgggattttggaaacaactaatggttcctataaaagaaatgactgatgttttaaaagtt
gttaaagtacaaacaggtttgagatctaaacaatgggttcgattgaaaaaaggtttgtat
aaagatgatattgctcaaatagattatgtggacttagcacaaaatcaagtacatttgaaa
cttttaccaaggattgattatactagaccacgtggggctctcaaagtatcaatggatcta
gaagctttaaagagaaagaaaaaaagacgtcctgcagccaaactgtttgatccagaagct
attagagctattggtggtgaagttaccagcgatggtgactttttaatatttgaaggaaat
cgatacagccgtaaaggatttctatacaaaaacttctacatgaatgctattataacagaa
ggagtcaaacctacactaatagaaattgaaatatttgaagactttcctgaaggcgtagac
atagaattaacattatcaaataaagataatttaacaaatagtcaaaccttatgttctgga
gataatgtagaagtatgtgctggagaattgataaatttgcaaggaaaagtgttatctatt
gacggtgatacagttttgatcatgccaaaacatgataatcttaatgtgccgctggaattt
atggcaaacgaactatgcaaattttttaaacaaggtgatcatgtaagagtagtaggagga
cgttttgagggtgatacaggactcattgttcgtgtagagcaaaatcgaattgtattattt
tctgatgtcactatgcatgaacttgaagttttacctcgtgatttacaattgtgtacagat
accgctactggagtagattcccttggacaatttcaatggggagatcttgtacaattagac
ccacaaaatgttggagtgatagtgagaattgagcgtgaaaaaatgcatattttaaatatg
gcaggaaaattggttgaagctaaaccacaatctttaaataaaaaaaaagaacatagaaat
acagtaggaattgatggtctgggaaattcaatacaacgaaatgaaattgtgaaagttatt
gatggtccacatacgggactgcatggtgaaattaaacatttatatcgccactttgccttt
ttgtattctcgtttaatgacagacaatggcggaatatttgtttgtcgtttaagacacatt
gccttagctggaagtataaaaaacaaactagctaagagtacaatacaaaatggattctca
tccccacaagctgtatcaccaaggcgtagtgactttggccagtttggtactaaagtaagt
gtaggaataggagaagaaacttttatgggaattggaggcaaatttggtggtgttcgaaga
gatataagattaattggtcagactattagaattactgttggcccttacaaaggtgctgtt
ggcattgtaaaagatgcaacagagtgtacagctagagttgaacttcattcatcttgtcaa
acaatatctgtggatcggaggaacataacaattattgtacaaccatccaatgatagaaga
ctaacatcgtcatattcaagaacaccagttaatgctttaacaactcctgggtatcgcgaa
ggaggcaaaactcctgtacatggtttaatgactcccaactatgaagttggtaaccgtacg
ccacactttggaaacatgactccatctcatgatggttctaaaacacccactaatgcttgg
gatccaagttctggatacactcctgccagaataacttatgaagatttagaatatccattg
gattctgatgcttcttatggacagtctccaaatacattgtatagttcttcagtacaatct
tactcaccgtatcaagaaatatcactatctggttgtaacagtattaattcttttataaat
actccaagtccaattgacacagatagccctcgtagcttttatccagcttcatcgccgcta
gtagaagaatatcttaaagaccaaatatcaaaatcataa
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integrated database retrieval system
