Aphis gossypii (cotton aphid): 114125401
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Entry
114125401 CDS
T05869
Name
(RefSeq) uncharacterized protein LOC114125401 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114125401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ags03021
]
114125401
03019 Messenger RNA biogenesis [BR:
ags03019
]
114125401
Transcription machinery [BR:
ags03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114125401
Messenger RNA biogenesis [BR:
ags03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114125401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
114125401
NCBI-ProteinID:
XP_027844825
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MTAKEKEVAEEYFNALADLNINSKPLINMLTMLAEENSAYAPIIVQCIERQLHKVQADSK
LPVLYLIDSVMKNIGQPYTPLFVQNIEKLFASTFIKVDEKTRANMYKLRSTWNDVVSATK
LHALDVIIHSMDKNWPLSAAPPNIHVNPKFLNNVNHTETPKPVQPIVPSDDEASLREKFI
KKQKELLELQQKKLELELLQTKNQIEIQKKRSMNKINLSKNTFNASTSSSTVSISPSNED
IYSKIQSSENPRRVTENPVKVIDVQSSIGSESPSMPIKVIVSPSKKFQPTSLPSVQQPFK
NSPQSFVPQQQNTEMVISSPIFNVNQPTAKIAPVSTQLLQTLNRDPRLRKVDTVVKPSPS
LTNDVKQSILKIKDDKKIDKPKRDNSKHRESKRKERSPSCSPSKTEFSIKIHKKPDRKEI
NLKDEKYHKKRDDKKKIKELDLKKKNILSNIKVDEQDETEIMKCVILPKIEDKIFKDKPN
NDTSHETIKINVSKEKDLITGVVNEGDNKNSENIISELEKTDSLEDSDSLKRLRKYMQTM
KKSPDPSTVATSPLEMKIDSDTHAVKSNQSILADIIIKQQNDIDLRIKVPTVKRTSDSIK
TDDIEPAAKKSKSEIIDELFGAEDVDLRTLPAPPIVPTPTPPPPPQISETPNPEIGKSWA
KYKEIKPDTFKTPYKSPAKKISCELNETLVDNNDTMDVDMRAKPTQNNKSHILRQAEEAL
NAVSISFDEYKKIMCQVIEMSEVEKLEEFNNTEDPNTKLKEFIVPKIALPVNGNGTDLKS
TLVEAVTIIEKSVDENNPALSSWNIGNKKPSDVSGSDSDGSSKSCSTGSEESKRINKKSD
SEDRAVYKRRKTTFKRNEKENSKTRTWRNNKSWNSRPENGSRFSQNRGVEPWSRGPRPNY
SHSTRSLVPPPMYEVPRPTAPFAPSSPDWTVPVIPPSDPVILDMIARDATKTITIDGKSR
EIRFYGPTAITFVSWDDPREIYFQGPPKNVIFDDLFPVLCHFNSPDREFLLDGQPHRVRL
GAPTRELYLDGNFYECFFGGAPIFTDLGGVKRSIKLEGPPPSVNIGNTKRQDLVAGRIGI
IVDNSYTVPAFLDAKPQRIDVGNTALIFRFIDGLMRAMINDQPFKVNYNGPPQAIIVRGN
KHYLRFTGLPPNIRPGYAAISQMMGVVLTEDSSESLPPIPTQAMPPNFTSFEMTTVTPND
DINQLPIQSFSSSYSLAPNTASVPLLPNVAQKLEPVTSSYVPPPTVSAPIIPPVLPSEMD
INELFKKLVDSGIVPKDKPKEVVQSKLKKKEKEAENLTIKPVDFSDPSSLKQKQPGLVHN
LYTGIQCSSCGIRFTAEFTIKYSSHLDWHFRQNRREKMASKTVQSRKWYYDTSDWCKYEE
QEDETTRAASWFDIQAEQGAKEDEKLEEENVPCVPAGENSELAACYLCHDQFEQFYNEKD
EEWQLKNCIEKDKRLYHPMCHDDMIKTREEKIRKRNRAIEEAKQLESQKIEIKDEQSQLE
ENIKMKDEENEGLKIEEKGLTEKDLLIKREILLEKESIGNKEVVTEKEAVIERGISNKEI
VIKTETTDMDTETTVMGTETTVMDTETIQETETIKKTETIQETETIQETETIKETEIIME
TETVEETESIKLKENEEQIVNANVTELVSQEPQTEENMKSKNYEDLEIPDTMEIIQVTEV
LSPKLIDEPIVENVNSLSSSTITQEIVSEEIKPKSPSPVSTMTCSIDGNTDTEWNVPVAP
AMGTIKINISQKITPVVKPTNLSENIPTEPQSPPDFTQTFGEIDPDQPPPPGLEMETVVV
PKVQRDMKPRLMHNAKKLKEYPIVNRGKEMSGLCSIM
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaaggaaaaagaagtagcagaagaatattttaatgccctggccgacctcaac
atcaatagcaagcctttgattaatatgttgacaatgctagctgaagagaactcagcttat
gcgccaatcattgtacagtgtattgaaagacaactgcataaggtgcaggccgacagcaag
ttaccagtgctttatttaattgactcagtcatgaaaaacattggacaaccatatacacca
cttttcgttcaaaatattgagaaactttttgctagcactttcattaaagttgatgaaaaa
actagagcaaatatgtataaattacgttctacgtggaatgacgttgtatcagctacaaag
cttcatgctcttgatgtaattattcattcaatggataaaaattggcctctgagtgctgct
ccaccaaacattcatgttaatccaaaatttttaaataatgttaatcatactgagactcca
aaacctgtacaaccaattgtacccagtgatgacgaggcatcgctacgggaaaaattcatt
aagaaacaaaaagaattacttgaactacagcaaaaaaaattggaactagaattactgcaa
accaaaaaccaaattgaaattcaaaagaaaagatcaatgaacaagataaatctatcaaaa
aatacttttaacgcaagtacatcatcttcgactgtgagtatttcaccttcaaatgaagat
atatattcgaaaatacagtcatctgaaaatcctcgaagagtaactgaaaatccagttaaa
gttattgacgtacaatcttccattggttctgagtcgccttcaatgccaattaaagttatt
gtttcaccttctaaaaaatttcaaccaacatctttaccttcagtacaacaaccatttaaa
aattctccgcaatcatttgtgccacaacaacaaaatacagaaatggttatttccagtcca
atattcaatgttaaccaaccaactgccaaaatcgccccagtcagtacacaattattacaa
actctaaaccgtgacccacgcttaagaaaagttgatactgttgtaaagccatcaccttca
cttactaatgatgtgaaacaatcaattctcaaaattaaagatgataaaaaaattgataaa
cccaaaagagacaacagtaagcaccgtgaatcaaaaagaaaagaaagaagtccaagctgt
tcaccttctaaaacagaattttcaataaaaatacataaaaaacctgaccgcaaagaaata
aacttaaaagatgaaaaatatcacaaaaaaagagatgataaaaaaaaaattaaagagctg
gacttaaagaaaaagaacatattatcaaatataaaagttgacgaacaggatgaaacagaa
attatgaaatgtgtaatactgccaaagattgaagataaaatattcaaagacaaacctaat
aatgatactagtcatgaaactattaaaattaatgtttctaaagaaaaagacttaattact
ggagtagttaatgaaggtgataacaaaaattctgaaaatattatttctgaactagaaaaa
accgattctctggaagattctgattctttaaaacgtcttcgtaagtacatgcaaactatg
aagaaatcacccgacccatcaactgttgctacttcaccattagaaatgaaaattgactca
gacactcatgctgtaaaatccaatcaaagtattcttgcagacattattatcaaacaacaa
aatgacattgacctaagaattaaagtcccaactgtgaagaggacctccgattcaatcaaa
actgatgatattgaacctgcagcaaaaaagagcaaatctgaaatcattgatgaactcttt
ggtgccgaagatgtagatttacgtacattacctgctccgcctattgtaccaacaccaaca
ccaccacctccgcctcaaatatctgaaacaccaaatcctgagattggtaaatcttgggca
aaatataaggaaataaaaccagatacatttaaaacaccgtataagtctcctgccaaaaaa
atttcttgtgaattgaatgaaacattagtagacaacaatgacacaatggatgtagatatg
agagctaaacctactcaaaacaataaaagtcatattcttagacaagctgaagaagcttta
aatgcagtaagcatatcttttgatgaatataaaaaaataatgtgtcaggtaattgaaatg
agtgaagtagaaaaattagaagaattcaataatacagaagatcctaatactaaattaaag
gaatttattgttccaaaaattgctttaccagtgaatggaaatggtactgatttaaaatct
acattagtagaagcagtaactattattgaaaaatctgttgacgaaaacaatcctgccctt
agttcttggaacattggtaacaaaaaacctagtgatgttagtggtagtgatagtgatggt
tcttcaaaaagttgttctactggttcagaagaatccaaaagaattaacaagaaatcagat
tccgaagatagagctgtgtataaaagacgtaaaacaacattcaaacgtaatgaaaaagaa
aattctaagactcgtacttggagaaataataaaagttggaattcaaggccagaaaatggt
tctagattttctcaaaatagaggagttgaaccttggtctagaggacctcgtccaaattat
tctcattcaacaagatctctcgttccaccaccgatgtatgaagtgccaagaccaactgct
ccatttgcaccttcttctcctgattggacagttcctgttattcctccttcagatcctgta
atattggatatgattgctcgcgatgctactaaaactatcactattgatggaaaatcaaga
gaaatacgattttatggtccaacagctattacttttgtatcatgggatgatcctagagag
atatactttcaagggcctccaaagaatgttatatttgatgatctttttccagtcttatgt
catttcaatagtcctgatagagaatttttattggatggtcaaccacatagagtacggtta
ggtgcacctactcgagaactttatttagatggcaatttctatgaatgtttttttggtggc
gctccaatatttacagaccttggtggtgtaaaaagatctattaaacttgaaggtcctcct
ccttcagttaatataggaaacacaaagcgacaagatttagttgctgggcgtattggtatt
attgttgataactcttacaccgtacctgcctttttagatgctaaaccgcaacgtattgat
gtgggaaacacagcacttatttttcgttttattgatggtttgatgagagctatgattaat
gaccaaccatttaaagtcaactataatggaccaccacaagcaattattgtaagaggcaat
aaacattatttaagatttacaggattaccaccaaacattagacctggttatgctgctatt
tctcaaatgatgggtgttgtattaactgaagattcttctgaatctttaccaccaatacct
actcaagctatgccaccaaatttcaccagttttgaaatgactacagtgacaccaaatgat
gatattaaccaacttcctatacaatcattctcttcttcttattctttagcaccaaatacg
gcatcagtacctctacttcctaatgttgctcaaaaattggaacctgttacaagttcttat
gtaccaccacctacagtgtctgctcctataatacctcctgtcttacctagtgaaatggat
attaatgagttatttaagaagttagtggacagtggaattgtaccaaaggacaagccaaaa
gaagttgtccaatcaaaactaaaaaagaaagagaaggaagcagaaaatttaaccataaaa
cctgttgatttttcagatccttcatcattaaaacaaaaacaaccaggattagttcacaat
ttatatacaggaattcagtgcagttcttgtggaattcgattcacagcagagtttacgata
aaatatagtagtcatttagattggcattttagacaaaatagacgtgaaaaaatggcaagc
aaaactgtccaatcaaggaaatggtattatgatactagtgactggtgtaaatatgaagaa
caagaagatgaaaccactagagctgcaagttggtttgatatacaagctgaacaaggtgct
aaagaagatgaaaaactagaagaagagaatgttccttgtgttccagctggtgaaaatagt
gaattagctgcctgttatctgtgtcatgatcagtttgaacaattttataatgaaaaagat
gaagagtggcaattgaagaattgtattgaaaaggataaacgactttatcatccaatgtgt
catgatgatatgattaaaacacgagaggaaaaaatccgtaagagaaatcgagctattgaa
gaagccaaacaattggaaagccaaaaaattgaaattaaagatgaacaatcgcaattggaa
gaaaatataaaaatgaaagatgaagaaaatgaaggattgaaaatagaagaaaaaggttta
actgagaaagatctattaataaaaagagaaatattattggaaaaagaatcaattggaaat
aaagaagtagttacagaaaaagaagcggtaatagaaagaggaatttcaaataaagaaatt
gttataaaaacagaaacaacagatatggacacagaaacaacagtcatgggtacagaaaca
acagttatggatacagaaacaattcaggaaactgaaacaattaagaaaacagaaacaatt
caggaaacagaaacaattcaggaaacagaaacaattaaagaaacagaaataattatggaa
acagaaacagttgaggaaacagaatcaattaaactaaaagaaaatgaagagcaaattgta
aatgcaaatgtaactgaactagtttctcaggaaccacaaactgaagaaaatatgaagtca
aagaattatgaagatttggaaattcctgatactatggaaattattcaagtgactgaagtt
ttatcacctaaattaatagatgagcctattgttgagaacgttaacagtttatcatcctct
acaatcactcaagaaattgtttctgaagaaattaaacctaaatctccatcccctgtatct
acaatgacatgttctattgatggaaatactgacactgaatggaatgttccagttgctccc
gctatggggacaattaagataaacattagtcaaaaaattacaccagttgtaaaaccaacc
aatctctctgaaaacatacccactgaaccacaatcaccgccagatttcacacagacgttt
ggagaaatcgatcctgatcagcctccaccaccagggcttgagatggaaactgtagtggtt
cctaaagtacaaagggatatgaaaccgagactgatgcacaacgcaaaaaaacttaaggaa
tatccaatagttaatagaggcaaagaaatgtctggattatgttcaattatgtaa
DBGET
integrated database retrieval system
