Aphis gossypii (cotton aphid): 114130696
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Entry
114130696 CDS
T05869
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags03022
Basal transcription factors
ags03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114130696
09124 Replication and repair
03420 Nucleotide excision repair
114130696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ags03021
]
114130696
03400 DNA repair and recombination proteins [BR:
ags03400
]
114130696
Transcription machinery [BR:
ags03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114130696
DNA repair and recombination proteins [BR:
ags03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114130696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
114130696
NCBI-ProteinID:
XP_027851527
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MSKEPSSSKEKRKNLRKDEGSKILKVLTLYEYLIKLPEAVQDRLYSHPPTCLTVFRVLPD
IAQQFTLRILFIEQPVPQSVLSSWVPANYSRELDESIEVATNLHIWKLTGVSGGLKGWIL
NSTFKKKLKVALMGGGRSMVANSDVIADPKARDIDFLDSYAYERWECILHYMVGSKHEGI
SSDAVRVLLNAGLMVRDTDDSPVITSTGFQFLLLDMATQVWYFMLRYMETVESRGLDLAQ
CLTFLFQIHLGTLGWDYITDEMSENLQAFLQHLREFGLVYQRRRKAGRFYPTRLVIEMGQ
GNSRTSERMKSKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMAAGILTRDSV
RTALRSGITAAQIVRFLTVHTHPQMQECGMPQTVIDQIYLWENERNRLTYTDGVLYSNIN
TPNDYETIKNYAAEIGALVWCDERRRNIVVSTDGHDDVRKFWKKQPKSDPF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagaacccagctctagtaaggaaaaacggaaaaatttacgtaaagacgagggt
tctaaaatacttaaagttcttacattatacgaatacctcatcaaacttccagaagctgtt
caagatcgtctatacagtcatcctccgacttgccttacagtatttagagtgttacctgac
attgcccaacagtttactttgcgtattttattcatcgaacaaccagtgccacaatcagtt
ctttcatcctgggtgccggccaattattcccgcgaacttgacgaatctatagaagtagcc
accaatttacacatatggaaattaactggtgtgtctggtggcctcaagggatggattcta
aattctacattcaagaagaaactcaaagtagcactaatgggcggtggccgttctatggta
gctaacagtgacgtgatagctgatccaaaagcaagagatatagactttttagattcatat
gcatatgaacgatgggaatgtatattacattacatggttggttctaaacatgaaggtatt
tcatcagatgcagtcagggtgttactaaatgcaggtcttatggtcagagatacggatgat
agtccagtaattacatcaacaggatttcagtttctattgctggacatggctactcaagtt
tggtactttatgctccgctatatggaaacagtagaatcaaggggtcttgatcttgctcaa
tgtctgacattcctctttcaaatacatcttggtactttaggatgggattatataactgac
gaaatgtctgaaaaccttcaagcatttctacaacatcttcgagaatttggattagtttac
caaaggaggcgtaaagctggacgtttttaccctactcgattagtaattgaaatgggacaa
ggaaatagtcgcacttcggaacgtatgaaatctaaagaacgttatatagttgtagaaacc
aattttcgaatttatgctatgactgattctgatctaaaagttgctttagttgcattattt
actcatatgctttacagatttccaaacatggctgctggtatactaacaagagattcagtt
cgaacggcattgcgtagtggcattactgctgcacaaatagtaagatttcttactgtacat
acacatccacaaatgcaagaatgtggaatgccgcaaactgttattgatcaaatttatctg
tgggaaaatgaaagaaatcgactaacatacacagatggtgtgttatatagcaatataaat
acccctaatgattatgaaacaataaaaaattatgctgctgaaattggggcattggtatgg
tgtgatgaaagaagaaggaacattgttgtaagtactgatggacacgatgatgtaaggaag
ttttggaaaaaacaaccaaaatctgatccattttaa
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