Agrobacterium sp. 33MFTa1.1: EYD00_25715
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Entry
EYD00_25715 CDS
T05906
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EYD00_25715 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agt03400
]
EYD00_25715 (ligD)
Enzymes [BR:
agt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EYD00_25715 (ligD)
DNA repair and recombination proteins [BR:
agt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EYD00_25715 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBJ16826
LinkDB
All DBs
Position
p_JBx_073812:481154..483805
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AA seq
883 aa
AA seq
DB search
MANDKLSTYRQKRDFQKTQEPSGKTKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEENGAAILDEN
DTSVASGRTMDAIAAGKGKKPKPFMVQSGDVQADAVWDSNHGLAADKRAADTKKRRPASP
KAAKSAMPDFIPPQLCETLERPPSADGWIHEIKFDGYRIQARIENGEVTLKTRKGLDWTA
KYPAIATSAASLPDAIIDGEICALDENGAPDFAALQAALSEGKTDALVYFAFDLLFEGSE
DLRQLPLTERKKRLEALLSEAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAP
YQSGRTDTWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFRDNHFVYVGRVGTGYGAKTV
DTILPKLRELETSKSPFTGIGAPKKEPNIVWVKPELVAEIQFAGWTADGLVRQAAFKGLR
EDKPAKEVEAETPASPGKTETPTPARPKPSRPARGKNTKAEVMGVMISSPDKPLWPDAND
GEPVTKEDLAHYHQAVGPWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLVELVK
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNEPEVPGRLVFDLDPGPDVPFSTVV
EAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGNKLSWPEAKGFAHDVCLQMARD
NPDLYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGAPVSMPLTWKQVKTDLDP
KRFTIRTVPALLSKTTAWQDYCDGQRSLEQAIKRLTKAMKQAA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgacaagctctcgacctacaggcagaaacgcgattttcagaagacgcaggag
ccaagcggaaaaacgaagctgaaagcttcaaaccgcaggcgctttgtcatccagaaacac
gacgccacgcggctccattatgacctgcgcctcgaactcgatggcgtcttcaagtcttgg
gctgtgaccaagggaccgtctctcgatccccaggacaagcgcctggccgtggaggtggaa
gaccacccgctggactatggtgacttcgaaggcacgatccccaaaggccaatatggcggc
ggcaccgtcatgctctgggatcgcggctactgggagccggaaggcaaccggacacccgag
caggcgctcgccaagggcgacttcaaatttacactggagggagagcggctgcatggcagc
ttcgtgctggtgcggatgcgcaatgaccgtgacggtggcaaacggacgaactggctgctg
atcaagcatcgcgacgacttctcggttgaagaaaacggcgccgccatccttgacgaaaac
gacacgtcggttgcctcgggcagaaccatggacgccatcgccgccggtaaaggaaagaaa
ccaaaaccgtttatggtgcagagcggcgatgtgcaggccgacgccgtctgggacagcaat
cacggactggcggcagataaacgtgcggcggatacgaagaaaaggcgccctgcatcgccg
aaagcggcgaagtccgcgatgcccgacttcatacctccgcagctttgcgaaacgctagaa
cgtccaccctcggccgatggctggatccacgagattaaattcgacggataccgtattcag
gcgcgcattgaaaacggcgaagtcacgctgaagacgcgcaaggggctggactggaccgcc
aagtatccggcgattgcgacatcggccgcaagcttgcctgatgccatcatcgacggtgag
atctgtgcgctcgatgaaaacggtgccccggacttcgccgcacttcaggcggcgctgtca
gaaggtaaaacggatgcgctcgtctattttgctttcgacctgctgttcgagggaagtgag
gatctaaggcaactaccgcttacggaacgcaagaaaaggctcgaagcgcttctgagcgag
gcgggggaagatccgcgcctgcggttcgtcgaacatttcgagaccggtggcgatgcagta
ttgaaatcggcgtgcaagctctcgctggagggcattgtctcgaagcaggcggatgccccc
tatcagtcggggcgtaccgatacctgggcgaaatccaaatgccgcgccggacatgaggtt
gtcattggcgcttacgccaaaaccaacggcaagtttcgttcacttcttgtcggcgtcttc
agggacaatcacttcgtctatgtcgggcgggtcgggaccggctatggtgccaaaacggtg
gatacaatcctgccgaagctccgggaactggaaacctcaaaatcgccctttaccggaata
ggcgctccgaaaaaggaacccaacatcgtctgggtcaagcccgaactggtggccgagatc
cagttcgctggctggaccgcggacggactggtccgtcaggcagccttcaagggtttgcgc
gaagacaagccggcgaaggaggtcgaggccgaaacgccggcatcgcccgggaaaactgaa
acgccaacgccggcccggccaaagccgtcgcgaccggcacgcggcaagaacaccaaggca
gaagtgatgggagtgatgatctccagccctgacaagccgctctggcccgatgcaaatgac
ggtgagccggtcaccaaggaggatctcgcgcactatcatcaggccgttggtccatggctg
atcgaccatatcaagggacggccatgctctatcatccggacgcctgacggcatcggtggt
gagcagttcttccagagacacgcgatgccgggaacgtcgaacctggtcgaactggtcaag
gtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgccatc
gcccagatcggcggcgtcgaactgcatccctggaattgcgagcccaacgaaccggaggtg
cccggtcgtcttgtcttcgaccttgatccgggtccggacgtacccttctccaccgtagtc
gaagccgcgcgggaaatgcgcgaccggctggaggagcttggcctcgtcagcttctgcaag
accaccggcggcaagggccttcacgtcgtcaccccgcttgcggtaccgaagggaaacaag
ctgagctggccggaggcgaaaggcttcgcacacgatgtgtgcctgcagatggcacgtgac
aaccctgacctttacctgatcaagatggcgaagaaccagcgcaacggccggatcttcctc
gactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcccgg
ccaggcgcaccagtatcgatgccgctgacctggaagcaggtaaaaacggatctcgatccg
aaacgcttcaccattcgcaccgtaccggcgcttttgtcgaagacaaccgcctggcaggat
tactgcgacgggcagcgttcgctggagcaggccatcaagcggctgacgaaggcgatgaaa
caggccgcctga
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