Aquisphaera giovannonii: OJF2_38800
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Entry
OJF2_38800 CDS
T06184
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agv
Aquisphaera giovannonii
Brite
KEGG Orthology (KO) [BR:
agv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OJF2_38800 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agv03400
]
OJF2_38800 (ykoU)
Enzymes [BR:
agv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OJF2_38800 (ykoU)
DNA repair and recombination proteins [BR:
agv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OJF2_38800 (ykoU)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
T2SS-T3SS_pil_N
Motif
Other DBs
NCBI-ProteinID:
QEH35329
UniProt:
A0A5B9W5C3
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All DBs
Position
5209429..5210949
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AA seq
506 aa
AA seq
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MPLDEYNAKRDFARTREPSGAGKGKAGRPARPIFVVQEHHASTLHYDFRLEADGVLKSWA
VPKGPSMDPTVKRLAVQVEDHPIGYATFEGEIPKGQYGGGTVRIWDRGTYESLMDRKDPP
ESVGEAIEAGRLEFALDGARLRGAFALVRMKARGKGKPQWLLIKGKDEFARAEPEPADEA
GRAAAKPRAAAAKRPSRPRGRRSVGAPRAVELTHADRVVFPEAGLTKRDVFAYYEKVADR
LLPFLVDRPITVERLPEGLAEGAPHFWQKDTPEYYPDWIPRVELVAESGKVVRYALVNDR
ETLLYLVNQGATTFHAWASRTRDLDRPDLVLFDLDPGAAPFADVIAVARAIGDSLIGQGA
GAFVKTSGKSGLHVLTPWDRAGGFDEARAWARELAERTAAALPALATVEIRKAKRGGRVY
IDVLQNARGHHAVPPYVLRAIPRATVSTPLDWKEVAEGLDPAAFTTKKALARFARRRTDP
FAGLLEAIGGRREPAASAPALAPARG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgccgctggacgaatacaacgccaaacgcgacttcgcccggacgcgcgagccgtcgggg
gcggggaaggggaaggccgggcggccggcgcggccgatcttcgtcgtgcaggagcatcac
gcctcgaccttgcattacgacttccgcctggaagccgacggcgtcctcaagagctgggcc
gtgccgaaggggccgtcgatggaccccacggtcaagcggctggccgtgcaggtcgaggac
catccgatcggctacgcgacgttcgagggggagatcccgaagggccagtacgggggcggc
acggtccggatctgggaccgcgggacgtatgagagcctcatggaccggaaggacccgccg
gaatccgtcggcgaggccatcgaggcgggtcggctcgagttcgccctggacggagcgcgg
ctccgcggggcgtttgccctcgtccgcatgaaggcccgcggcaagggcaagccgcagtgg
ctgctcatcaaggggaaggacgagttcgcccgtgccgagcccgagccggccgacgaggcc
gggagggctgcggcgaagcccagggccgccgccgcgaagcgcccgagccggccccgcggg
cggcgatcggtcggggccccgcgggcggtcgagctgacccatgccgaccgcgtcgtcttc
cccgaggccgggctcaccaagcgcgacgtcttcgcctattacgagaaggtcgccgaccgc
ctcctcccgttcctggtggaccggcccatcacggtcgagcgcctgcccgagggcctcgcc
gagggggcgccccatttctggcagaaggacacgccggagtactaccccgactggatcccc
cgcgtcgagctggtggccgagagcgggaaggtcgtccgctacgcgctggtcaacgaccgg
gagacgctcctgtacctggtgaaccagggcgcgaccaccttccacgcctgggcctcgcgg
acgcgggacctggaccggcccgatctcgtgctcttcgacctggaccccggcgcggcgcct
ttcgccgacgtgatcgccgtggcgagggccatcggggattcgctcatagggcagggggcc
ggggcgttcgtgaagacctcgggcaagagcggcctccacgtcctgacgccgtgggaccgg
gccggcgggttcgacgaggcgcgggcctgggcacgcgagctcgccgagcggacggccgcg
gccctaccggcgctcgccacggtcgagatccgcaaggccaaacggggcgggcgggtctac
atcgacgtcctccagaacgcgcgcgggcatcacgccgtcccgccgtacgtcctgcgggcc
atcccgcgcgcgacggtctccaccccgctggactggaaggaggtcgccgaggggctcgac
cccgcggcgttcacgaccaagaaggccctcgcccgcttcgcccggcggaggacggacccg
ttcgcgggcctcctggaggcgatcggcggccgtcgcgagccggcggcctcggcgccggca
ctggcgccggcgaggggctga
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