Agreia sp. COWG: AGREI_2201
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Entry
AGREI_2201 CDS
T07018
Symbol
ligD
Name
(GenBank) DNA repair polymerase / 3'-phosphoesterase / DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agx
Agreia sp. COWG
Pathway
agx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AGREI_2201 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agx03400
]
AGREI_2201 (ligD)
Enzymes [BR:
agx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGREI_2201 (ligD)
DNA repair and recombination proteins [BR:
agx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AGREI_2201 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CAD6002987
LinkDB
All DBs
Position
COWG:2196008..2198401
Genome browser
AA seq
797 aa
AA seq
DB search
MSDQKHVVSVGGHRIALTNLDKVLYPETQTTKADVLEYYAAVAEVLVAHARDRPATRKRW
VDGVGTDEHPGQKFFQKNLDDGTPRWVARRAIEHKNHDNDYPLVNDLATLTWLGQIAALE
IHVPQWRFARTGEPRNPDRLVLDLDPGEGVGLAECAEVARLARTILRDMGLDPLPVTSGS
KGIHLYAALDGRQTSDEVSAVAHELARVLEAQNPELIVSDMKKELRRGRVLVDWSQNSGS
KTTITPYSLRGRARPTVAAPRTWRELASASLTQLEYPEVLRRLKRRGDPLADLAHGHLDS
LEPTADRLAKYRSMRDGSKTPEPVPTEPAAASEGRSFVIQEHHARRLHYDFRLEHDGVLV
SWALPKGVPTDKTQNHLAVQTEDHPLDYGSFEGRIPEGEYGAGEVSIWDSGTYELEKWRE
GTEVIATLTGTKPEGLGAPRRFALIHTGGAGRADNNWLIHLMDAAAPRSAKPDAPAADYS
PMLATAGTREGVPGGEEWSYEMKWDGIRAIAVVRGGRVRLSSRNGNDLGRSFPEIAEALA
QATTRDCVLDGEIVALDAAGRPDFGRLQTRMKLTKKADVARAVASTRAHYFAFDALEDDA
APLLTATYDERRDALRQLVDVTDSGLVQVPPAYDGDLDEAIAASVELRLEGIVAKKRRST
YRAGARSPSWVKLKLHRTQEVVVVGWRPGTGRRADSVGSLLLAIPDGGELRYVGRVGTGF
SDDDLMKLRSRFERSARKTSPAVSVPAADARDANWITPSGVGEVEFAEWTSTSRLRQPVW
RGWRPDKDPSDVVVEEP
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatcagaagcacgtggtctccgtgggcggacacaggatcgcgctcacgaatctc
gacaaggtgctctaccccgagacgcagacgaccaaggcagacgtgctggagtactacgcc
gcggtagcggaggtgctcgtggctcacgcgcgcgacaggccggccacgcgcaagagatgg
gtcgacggcgtcggcaccgacgagcatccgggccagaagttctttcagaagaacctcgac
gacggcaccccgcgttgggtcgccagaagggcgatagagcacaagaatcacgacaacgac
tatccgctggtgaacgacctcgccaccctcacctggctcggccagatcgccgcgctcgag
atccacgttccgcagtggcgcttcgcacgcacgggtgagcccaggaatcccgacaggctc
gtgctcgacctcgacccgggcgagggagtgggcctcgcggagtgtgccgaggtggcaagg
ctcgcacgcacgatcctgcgcgacatggggctcgatcccctgcccgtgacgagcggttcg
aagggcatccacctctacgcggcgctcgacggcaggcagacgtccgacgaggtctccgcc
gtcgcacacgagttggccagggtcctcgaggcccagaatcccgagctcatcgtgagtgac
atgaagaaagagcttcgccgaggcagggtgctcgtcgactggagccagaacagcggatcg
aagaccaccatcaccccctactcgctgcggggccgcgcgcgccccaccgtggctgcgcct
cgcacgtggcgcgagctcgcgagcgcgagcctcacgcagctcgagtaccccgaggtgctg
cgccggctgaaacgtcgcggcgatcccctggcagatctcgcccacggccacctcgactcc
ctcgagcccaccgcagaccggctcgcgaaataccgcagcatgcgcgacgggtcgaagact
cccgagccggtgccgaccgagcctgccgcagcgagcgaaggccgctccttcgtcatccag
gagcatcatgctcggcgactgcactacgacttccggctggaacacgacggcgttctggtg
agctgggcccttccgaagggcgtgccgaccgacaagacgcagaaccacctcgccgtgcag
acggaggatcatccgctcgactacggatcgttcgaggggcgcatccccgagggcgagtac
ggcgcaggcgaggtcagcatctgggacagcggcacgtacgaactcgagaagtggcgagag
ggcacagaggtcatcgccaccctcaccggaacgaagcccgaggggctcggtgcgcctcga
cggttcgccctcatccacacgggaggtgccggtcgcgccgacaacaactggctgatccac
ctgatggatgcggccgcgccgcgttcggccaagcccgatgcgccggccgccgactactcc
ccgatgcttgcaacggcgggtacacgcgaaggggtgccgggcggtgaggagtggtcctac
gagatgaagtgggacggcatccgggcgatcgccgtcgtgcggggtggacgggtgcgtcta
tcgagtcgcaacggtaacgacctgggccgcagctttcccgagatcgcggaggcactcgcc
caagcgaccaccagagactgtgtgctcgacggcgagatcgtcgcgctcgacgcggcgggc
agaccagacttcggccgtctgcagacccgcatgaagctcaccaagaaggccgatgtcgcg
agggcagtcgcgtcgactcgcgcgcactactttgcgttcgacgcgctcgaagacgacgcg
gcgcccctgctcacggccacctacgacgaacgtcgcgacgccctccggcagctcgtcgac
gtcaccgattcaggcctcgtgcaggtgccccccgcctacgacggcgatctcgacgaggcc
atcgccgcgagcgtcgagctgcggctcgaggggatcgtcgcgaagaagcgccgatcgacc
taccgcgccggagcccgatccccctcgtgggtgaagctcaagctgcaccgcacccaggaa
gtggtggtcgtgggctggagaccggggacgggtcgtcgagccgattcagtgggctccctg
ctgctcgctattcccgacggcggcgagctgcgctacgtgggacgcgtgggcaccggcttc
agcgacgacgacctgatgaagcttcgttcgcgcttcgagcgctccgcccggaagacgtcg
cccgccgtctccgtaccggccgcggatgcccgcgacgcgaactggatcactccctcgggc
gtcggcgaggtcgagttcgctgagtggacgtcgacgtcgagactgcgccagccggtgtgg
cgcggctggcgtcccgacaaagacccctccgacgtggtcgtcgaggagccctaa
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